Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 337-585 |
| Cow position: | chr21:32459767-32460014 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 337-602 |
| Cow position: | chr21:25144406-25144131 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 337-613 |
| Cow position: | chr21:37260286-37260556 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 20 |
| Conread position: | 337-654 |
| Cow position: | chr21:40698489-40698177 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 337-657 |
| Cow position: | chr21:35743888-35744214 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 337-666 |
| Cow position: | chr21:18468654-18468976 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-666 |
| Cow position: | chr21:42074578-42074901 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 341-629 |
| Cow position: | chr21:32401912-32401624 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 16 |
| Conread position: | 343-665 |
| Cow position: | chr21:7075468-7075149 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 343-666 |
| Cow position: | chr21:9200109-9199791 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-679 |
| Cow position: | chr21:35555813-35555493 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 263, 12 |
| Conread position: | 343-687 |
| Cow position: | chr21:958600-958268 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 145, 10 |
| Conread position: | 346-592 |
| Cow position: | chr21:36210379-36210624 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 350-608 |
| Cow position: | chr21:25335269-25335520 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 42 |
| Conread position: | 350-613 |
| Cow position: | chr21:49691178-49690923 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 352-604 |
| Cow position: | chr21:39255863-39256120 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 352-695 |
| Cow position: | chr21:32040212-32040540 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 353-566 |
| Cow position: | chr21:12575059-12574830 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 353-608 |
| Cow position: | chr21:37348524-37348780 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 353-644 |
| Cow position: | chr21:35306266-35306553 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 353-666 |
| Cow position: | chr21:9015887-9015581 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-666 |
| Cow position: | chr21:12410447-12410141 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 353-675 |
| Cow position: | chr21:6605974-6606295 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 353-675 |
| Cow position: | chr21:13361249-13360934 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 353-675 |
| Cow position: | chr21:19573012-19572698 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-679 |
| Cow position: | chr21:2682039-2681723 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 353-682 |
| Cow position: | chr21:10275914-10275588 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 126, 69 |
| Conread position: | 353-718 |
| Cow position: | chr21:32920129-32919761 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 80 |
| Conread position: | 354-749 |
| Cow position: | chr21:41535767-41536162 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 67, 145 |
| Conread position: | 355-655 |
| Cow position: | chr21:2832474-2832772 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 356-760 |
| Cow position: | chr21:372540-372929 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 92 |
| Conread position: | 358-641 |
| Cow position: | chr21:41139931-41140204 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 365-655 |
| Cow position: | chr21:17206042-17205754 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 368-608 |
| Cow position: | chr21:12647643-12647410 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 369-672 |
| Cow position: | chr21:8515881-8515585 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 371-675 |
| Cow position: | chr21:48538271-48537970 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 378-609 |
| Cow position: | chr21:14478291-14478521 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 397-693 |
| Cow position: | chr21:19671647-19671355 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 436-675 |
| Cow position: | chr21:36008551-36008319 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 437-591 |
| Cow position: | chr21:33270561-33270405 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 437-666 |
| Cow position: | chr21:44558653-44558881 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 452-667 |
| Cow position: | chr21:37707944-37708160 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 452-675 |
| Cow position: | chr21:4809530-4809757 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 455-671 |
| Cow position: | chr21:8941267-8941479 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 456-636 |
| Cow position: | chr21:9013946-9013767 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 477-654 |
| Cow position: | chr21:39145383-39145206 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 477-665 |
| Cow position: | chr21:20785272-20785087 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 179, 143 |
| Conread position: | 477-675 |
| Cow position: | chr21:14681954-14681755 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 136 |
| Conread position: | 482-646 |
| Cow position: | chr21:17788873-17788710 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 153, 81 |
| Conread position: | 482-666 |
| Cow position: | chr21:18540805-18540624 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 86 |
| Conread position: | 486-666 |
| Cow position: | chr21:14685742-14685924 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 487-666 |
| Cow position: | chr21:9019389-9019212 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 493-697 |
| Cow position: | chr21:42863439-42863646 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 510-644 |
| Cow position: | chr21:22162864-22162731 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 96, 103 |
| Conread position: | 514-644 |
| Cow position: | chr21:39666761-39666631 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 515-658 |
| Cow position: | chr21:10418208-10418070 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 515-695 |
| Cow position: | chr21:49689075-49689254 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 520-640 |
| Cow position: | chr21:8610201-8610082 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 104 |
| Conread position: | 525-667 |
| Cow position: | chr21:19934302-19934159 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
Show alignments to all cow chromosomes.