Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 329-666 |
| Cow position: | chr23:6048306-6048635 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 337-639 |
| Cow position: | chr23:18244038-18243742 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 337-666 |
| Cow position: | chr23:35164496-35164815 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 337-687 |
| Cow position: | chr23:6303907-6303570 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 343-588 |
| Cow position: | chr23:595606-595369 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 135, 10 |
| Conread position: | 351-716 |
| Cow position: | chr23:28882549-28882205 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 138, 77 |
| Conread position: | 352-637 |
| Cow position: | chr23:20245929-20246212 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 353-577 |
| Cow position: | chr23:18394076-18394293 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 353-607 |
| Cow position: | chr23:4652176-4651926 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-611 |
| Cow position: | chr23:27918656-27918401 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 353-636 |
| Cow position: | chr23:27688-27969 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 353-644 |
| Cow position: | chr23:23877317-23877609 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 83 |
| Conread position: | 353-666 |
| Cow position: | chr23:14740920-14741222 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 353-671 |
| Cow position: | chr23:5220046-5219735 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 126, 66 |
| Conread position: | 353-671 |
| Cow position: | chr23:19841177-19840868 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 105, 21 |
| Conread position: | 353-675 |
| Cow position: | chr23:26343128-26343460 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 353-711 |
| Cow position: | chr23:22305467-22305114 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 353-718 |
| Cow position: | chr23:33993429-33993805 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 342 |
| Conread position: | 355-675 |
| Cow position: | chr23:596849-596538 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 355-722 |
| Cow position: | chr23:13307682-13307343 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 355-744 |
| Cow position: | chr23:665095-664721 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 356-679 |
| Cow position: | chr23:12972265-12972577 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 359-695 |
| Cow position: | chr23:18568280-18568609 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 97, 69 |
| Conread position: | 373-665 |
| Cow position: | chr23:1280684-1280399 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 378-666 |
| Cow position: | chr23:18986904-18987182 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 389-687 |
| Cow position: | chr23:19788574-19788862 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 252, 34 |
| Conread position: | 402-716 |
| Cow position: | chr23:22294247-22294558 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 435-632 |
| Cow position: | chr23:26591092-26590894 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 136 |
| Conread position: | 436-665 |
| Cow position: | chr23:36437488-36437257 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 53, 134 |
| Conread position: | 437-679 |
| Cow position: | chr23:12980319-12980558 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 452-665 |
| Cow position: | chr23:9637407-9637195 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 169, 22 |
| Conread position: | 452-666 |
| Cow position: | chr23:7527231-7527443 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 455-716 |
| Cow position: | chr23:7523471-7523207 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 165 |
| Conread position: | 468-675 |
| Cow position: | chr23:3536126-3536334 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 477-718 |
| Cow position: | chr23:22331321-22331560 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 167, 34 |
| Conread position: | 482-676 |
| Cow position: | chr23:30589074-30589269 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 165, 142 |
| Conread position: | 483-632 |
| Cow position: | chr23:20286027-20286174 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 486-614 |
| Cow position: | chr23:22956587-22956458 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 504-665 |
| Cow position: | chr23:20108081-20108242 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 116 |
| Conread position: | 521-718 |
| Cow position: | chr23:36439914-36440105 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 535-679 |
| Cow position: | chr23:31086208-31086065 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 105, 90 |
Show alignments to all cow chromosomes.