Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 329-604 |
| Cow position: | chr24:2961313-2961045 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 337-580 |
| Cow position: | chr24:43913133-43913368 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-599 |
| Cow position: | chr24:26108265-26108523 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 255, 18 |
| Conread position: | 337-678 |
| Cow position: | chr24:31377127-31376802 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 337-756 |
| Cow position: | chr24:41503397-41502962 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 341-597 |
| Cow position: | chr24:32218233-32217979 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 343-637 |
| Cow position: | chr24:39465219-39464935 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-663 |
| Cow position: | chr24:139827-140138 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 353-608 |
| Cow position: | chr24:4800365-4800118 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 353-629 |
| Cow position: | chr24:38036819-38037086 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 37 |
| Conread position: | 353-644 |
| Cow position: | chr24:26262452-26262170 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 353-675 |
| Cow position: | chr24:263696-264018 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-682 |
| Cow position: | chr24:26891963-26892286 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 353-695 |
| Cow position: | chr24:18620729-18621061 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 355-664 |
| Cow position: | chr24:18401364-18401683 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 94, 268 |
| Conread position: | 357-608 |
| Cow position: | chr24:13161651-13161405 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 164, 24 |
| Conread position: | 357-633 |
| Cow position: | chr24:236324-236049 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 357-672 |
| Cow position: | chr24:41205671-41205362 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 368-718 |
| Cow position: | chr24:265949-266303 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 371-694 |
| Cow position: | chr24:39467313-39466978 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 69, 215 |
| Conread position: | 436-639 |
| Cow position: | chr24:30758786-30758582 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 440-665 |
| Cow position: | chr24:20927523-20927301 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 180 |
| Conread position: | 440-711 |
| Cow position: | chr24:8376510-8376786 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 76 |
| Conread position: | 452-597 |
| Cow position: | chr24:19735099-19734953 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 453-637 |
| Cow position: | chr24:27218565-27218381 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 173 |
| Conread position: | 454-608 |
| Cow position: | chr24:39460294-39460140 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 454-621 |
| Cow position: | chr24:13767004-13766837 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 454-666 |
| Cow position: | chr24:3836086-3836295 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 454-716 |
| Cow position: | chr24:155692-155955 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 477-666 |
| Cow position: | chr24:41504830-41504641 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 96 |
| Conread position: | 482-675 |
| Cow position: | chr24:35213531-35213722 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 163, 95 |
| Conread position: | 483-637 |
| Cow position: | chr24:39304155-39304307 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
Show alignments to all cow chromosomes.