Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 1-172 |
| Cow position: | chr25:24750916-24750743 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 337-593 |
| Cow position: | chr25:2002214-2001966 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 118, 17 |
| Conread position: | 337-625 |
| Cow position: | chr25:13799876-13799591 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 340-709 |
| Cow position: | chr25:34420634-34420286 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 343-603 |
| Cow position: | chr25:21320744-21321001 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chr25:2497226-2497537 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chr25:17389909-17390220 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 345-706 |
| Cow position: | chr25:24750720-24750363 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 346-633 |
| Cow position: | chr25:21516712-21516435 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 351-711 |
| Cow position: | chr25:6932556-6932896 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 82 |
| Conread position: | 353-604 |
| Cow position: | chr25:6949857-6950108 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 353-606 |
| Cow position: | chr25:8976458-8976211 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-606 |
| Cow position: | chr25:32663579-32663825 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-609 |
| Cow position: | chr25:25687218-25686975 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 353-644 |
| Cow position: | chr25:11411185-11411469 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr25:16129114-16129432 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 353-675 |
| Cow position: | chr25:21137798-21138118 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 355-655 |
| Cow position: | chr25:20255575-20255285 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 355-672 |
| Cow position: | chr25:20645988-20645676 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 357-620 |
| Cow position: | chr25:21517024-21516768 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 358-678 |
| Cow position: | chr25:5774155-5774470 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 366-711 |
| Cow position: | chr25:20193499-20193155 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 376-695 |
| Cow position: | chr25:21036570-21036884 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 376-696 |
| Cow position: | chr25:21364396-21364723 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 115 |
| Conread position: | 403-712 |
| Cow position: | chr25:19431967-19431654 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 436-666 |
| Cow position: | chr25:26236559-26236786 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 171 |
| Conread position: | 452-603 |
| Cow position: | chr25:13695463-13695616 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 452-606 |
| Cow position: | chr25:16695660-16695816 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 454-637 |
| Cow position: | chr25:26313949-26313766 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 172 |
| Conread position: | 455-603 |
| Cow position: | chr25:7510133-7510282 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 455-651 |
| Cow position: | chr25:23821292-23821104 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 188, 25 |
| Conread position: | 477-640 |
| Cow position: | chr25:13492535-13492697 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 136, 44 |
| Conread position: | 499-711 |
| Cow position: | chr25:18456051-18455853 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 502-644 |
| Cow position: | chr25:31115245-31115109 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 765-872 |
| Cow position: | chr25:24750364-24750256 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.