Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 334-603 |
| Cow position: | chr27:28546395-28546657 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 337-641 |
| Cow position: | chr27:20009932-20009634 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 343-588 |
| Cow position: | chr27:56056-56293 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 343-675 |
| Cow position: | chr27:5486561-5486239 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-675 |
| Cow position: | chr27:26072233-26071914 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 351-675 |
| Cow position: | chr27:20254995-20255301 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 352-628 |
| Cow position: | chr27:18673571-18673308 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 127, 17 |
| Conread position: | 353-603 |
| Cow position: | chr27:29700241-29699996 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-603 |
| Cow position: | chr27:31545408-31545659 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 353-604 |
| Cow position: | chr27:31261818-31261573 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 353-666 |
| Cow position: | chr27:7618463-7618764 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 353-675 |
| Cow position: | chr27:7841632-7841323 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 355-654 |
| Cow position: | chr27:23914157-23914451 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 355-664 |
| Cow position: | chr27:15511972-15511669 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 42 |
| Conread position: | 415-720 |
| Cow position: | chr27:29665516-29665207 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 435-637 |
| Cow position: | chr27:7139857-7139655 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 132 |
| Conread position: | 441-640 |
| Cow position: | chr27:12474385-12474578 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 452-604 |
| Cow position: | chr27:18731335-18731487 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 31, 138 |
| Conread position: | 452-644 |
| Cow position: | chr27:4496841-4496650 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 172 |
| Conread position: | 452-644 |
| Cow position: | chr27:5096066-5095878 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 455-637 |
| Cow position: | chr27:7148254-7148074 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 455-686 |
| Cow position: | chr27:23089772-23089540 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 458-665 |
| Cow position: | chr27:22218527-22218733 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 189, 22 |
| Conread position: | 462-695 |
| Cow position: | chr27:23996379-23996611 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 142 |
| Conread position: | 477-644 |
| Cow position: | chr27:30992460-30992625 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 482-608 |
| Cow position: | chr27:23064434-23064310 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 494-623 |
| Cow position: | chr27:16587588-16587717 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 515-607 |
| Cow position: | chr27:19455222-19455314 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 78 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-710 |
| Cow position: | chr27:17826514-17826699 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 123, 35 |
Show alignments to all cow chromosomes.