Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 333-716 |
| Cow position: | chr29:27060822-27061207 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 337-527 |
| Cow position: | chr29:39295948-39296126 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 337-597 |
| Cow position: | chr29:40098102-40098364 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 337-601 |
| Cow position: | chr29:14938430-14938704 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 337-648 |
| Cow position: | chr29:313288-312987 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 337-720 |
| Cow position: | chr29:18445085-18444723 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 13 |
| Conread position: | 337-725 |
| Cow position: | chr29:39532230-39532606 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 338-666 |
| Cow position: | chr29:8849377-8849695 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 343-654 |
| Cow position: | chr29:29455986-29455684 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 343-679 |
| Cow position: | chr29:30355616-30355931 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 350-595 |
| Cow position: | chr29:1900772-1900534 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 350-604 |
| Cow position: | chr29:6744082-6743833 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 352-711 |
| Cow position: | chr29:1586239-1586584 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 353-607 |
| Cow position: | chr29:32203829-32204080 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-666 |
| Cow position: | chr29:20049564-20049873 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 353-666 |
| Cow position: | chr29:40632947-40632649 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 353-673 |
| Cow position: | chr29:10625789-10626104 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 353-675 |
| Cow position: | chr29:30575990-30575676 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 353-678 |
| Cow position: | chr29:29128550-29128870 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 353-705 |
| Cow position: | chr29:27058153-27058493 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 353-714 |
| Cow position: | chr29:38262857-38263209 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 354-711 |
| Cow position: | chr29:43152981-43153330 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 125, 69 |
| Conread position: | 355-604 |
| Cow position: | chr29:13500815-13500579 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 356-579 |
| Cow position: | chr29:31177519-31177301 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 67 |
| Conread position: | 356-659 |
| Cow position: | chr29:30721860-30722162 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 128, 92 |
| Conread position: | 356-678 |
| Cow position: | chr29:1447261-1446946 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 357-608 |
| Cow position: | chr29:24704408-24704147 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 361-711 |
| Cow position: | chr29:39419405-39419746 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 97, 69 |
| Conread position: | 365-706 |
| Cow position: | chr29:1761692-1762026 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 368-725 |
| Cow position: | chr29:40567208-40566851 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 436-666 |
| Cow position: | chr29:24801863-24801632 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 192 |
| Conread position: | 452-609 |
| Cow position: | chr29:16431521-16431362 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 452-675 |
| Cow position: | chr29:23133888-23134109 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 204, 30 |
| Conread position: | 452-679 |
| Cow position: | chr29:29637516-29637741 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 128 |
| Conread position: | 455-727 |
| Cow position: | chr29:39420052-39420324 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 456-716 |
| Cow position: | chr29:40874477-40874733 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 187, 18 |
| Conread position: | 477-654 |
| Cow position: | chr29:11360952-11360776 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 169, 146 |
| Conread position: | 477-665 |
| Cow position: | chr29:34090103-34090289 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 136, 147 |
| Conread position: | 477-666 |
| Cow position: | chr29:11973109-11973296 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 136, 148 |
| Conread position: | 484-676 |
| Cow position: | chr29:21306810-21306617 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 494-666 |
| Cow position: | chr29:26524507-26524334 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 112, 119 |
| Conread position: | 502-673 |
| Cow position: | chr29:42904990-42904825 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 515-644 |
| Cow position: | chr29:24506790-24506917 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 517-655 |
| Cow position: | chr29:2540940-2540805 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 88 |
Show alignments to all cow chromosomes.