Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 329-666 |
| Cow position: | chr3:78096026-78096343 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 330-744 |
| Cow position: | chr3:63151943-63151523 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 337-601 |
| Cow position: | chr3:52852223-52851962 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 338-601 |
| Cow position: | chr3:61961980-61961706 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 91, 15 |
| Conread position: | 338-637 |
| Cow position: | chr3:9770270-9770550 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 343-666 |
| Cow position: | chr3:72884702-72885021 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-673 |
| Cow position: | chr3:11952302-11951975 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 10 |
| Conread position: | 343-711 |
| Cow position: | chr3:17615610-17615950 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 177, 10 |
| Conread position: | 350-633 |
| Cow position: | chr3:32246587-32246311 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 350-666 |
| Cow position: | chr3:14184529-14184221 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 352-567 |
| Cow position: | chr3:2256519-2256301 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 92, 134 |
| Conread position: | 352-595 |
| Cow position: | chr3:7814192-7814435 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 197, 95 |
| Conread position: | 353-593 |
| Cow position: | chr3:71704049-71703796 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 143 |
| Conread position: | 353-607 |
| Cow position: | chr3:27524135-27524385 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr3:39403750-39403425 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr3:79067120-79067440 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 355-575 |
| Cow position: | chr3:58190016-58189809 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 355-660 |
| Cow position: | chr3:81222194-81222492 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 355-671 |
| Cow position: | chr3:32578993-32578686 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 355-711 |
| Cow position: | chr3:63998077-63998429 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 356-672 |
| Cow position: | chr3:16574475-16574787 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 357-597 |
| Cow position: | chr3:45948705-45948933 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 357-637 |
| Cow position: | chr3:79071191-79070920 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 357-658 |
| Cow position: | chr3:31110219-31110515 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 357-695 |
| Cow position: | chr3:79141851-79142188 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 361-606 |
| Cow position: | chr3:14042720-14042965 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 361-608 |
| Cow position: | chr3:4333186-4332941 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 364-704 |
| Cow position: | chr3:39226914-39226561 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 76, 171 |
| Conread position: | 371-711 |
| Cow position: | chr3:83458862-83459195 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 390-718 |
| Cow position: | chr3:8435611-8435285 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 59 |
| Conread position: | 391-684 |
| Cow position: | chr3:25695468-25695754 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 434-595 |
| Cow position: | chr3:47976266-47976105 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 436-676 |
| Cow position: | chr3:6591525-6591775 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 438-711 |
| Cow position: | chr3:48920482-48920193 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 42 |
| Conread position: | 439-689 |
| Cow position: | chr3:3811973-3811726 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 442-675 |
| Cow position: | chr3:52608825-52608587 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 220 |
| Conread position: | 452-603 |
| Cow position: | chr3:60788011-60788160 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 452-644 |
| Cow position: | chr3:45936967-45937155 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 42 |
| Conread position: | 454-580 |
| Cow position: | chr3:65534952-65535079 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 454-636 |
| Cow position: | chr3:44090658-44090479 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 454-676 |
| Cow position: | chr3:69279958-69279732 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 454-711 |
| Cow position: | chr3:53910846-53911100 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 455-603 |
| Cow position: | chr3:80996693-80996543 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 455-670 |
| Cow position: | chr3:549150-548936 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 164, 35 |
| Conread position: | 457-654 |
| Cow position: | chr3:6769944-6769748 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 462-666 |
| Cow position: | chr3:6644846-6645047 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 462-675 |
| Cow position: | chr3:14038888-14038674 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 163 |
| Conread position: | 467-666 |
| Cow position: | chr3:83606242-83606044 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 469-686 |
| Cow position: | chr3:53210684-53210468 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 137, 13 |
| Conread position: | 472-668 |
| Cow position: | chr3:53211454-53211648 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 476-604 |
| Cow position: | chr3:67537650-67537521 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 476-668 |
| Cow position: | chr3:28595678-28595493 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 165, 28 |
| Conread position: | 482-612 |
| Cow position: | chr3:73549134-73549265 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 484-632 |
| Cow position: | chr3:75055801-75055655 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 503-691 |
| Cow position: | chr3:83980690-83980508 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 508-654 |
| Cow position: | chr3:6559180-6559037 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 516-678 |
| Cow position: | chr3:67828671-67828509 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 535-711 |
| Cow position: | chr3:6736302-6736475 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 0 |
Show alignments to all cow chromosomes.