Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 329-640 |
| Cow position: | chr4:54377404-54377704 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 200, 25 |
| Conread position: | 337-521 |
| Cow position: | chr4:20475502-20475695 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 337-590 |
| Cow position: | chr4:32713596-32713354 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 337-592 |
| Cow position: | chr4:39086267-39086524 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 107, 12 |
| Conread position: | 337-610 |
| Cow position: | chr4:14422260-14422543 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 337-665 |
| Cow position: | chr4:37548438-37548761 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 16 |
| Conread position: | 337-673 |
| Cow position: | chr4:23613228-23612887 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 337-711 |
| Cow position: | chr4:63548767-63549139 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 337-718 |
| Cow position: | chr4:36505643-36506023 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 337-725 |
| Cow position: | chr4:59857906-59858280 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 338-752 |
| Cow position: | chr4:37857190-37857587 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 17 |
| Conread position: | 343-612 |
| Cow position: | chr4:49410267-49410526 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chr4:35070557-35070241 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 343-666 |
| Cow position: | chr4:53652009-53651701 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 343-673 |
| Cow position: | chr4:18797424-18797749 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 58, 10 |
| Conread position: | 343-675 |
| Cow position: | chr4:43563505-43563825 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-675 |
| Cow position: | chr4:43566617-43566937 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 348-718 |
| Cow position: | chr4:14947580-14947232 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 349-605 |
| Cow position: | chr4:28227280-28227524 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 353-596 |
| Cow position: | chr4:32803860-32803627 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 45 |
| Conread position: | 353-628 |
| Cow position: | chr4:68310837-68310575 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 353-637 |
| Cow position: | chr4:33002742-33002461 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-641 |
| Cow position: | chr4:54379309-54379026 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 353-648 |
| Cow position: | chr4:30016717-30017007 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 353-655 |
| Cow position: | chr4:29119632-29119340 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 353-663 |
| Cow position: | chr4:39338028-39338342 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 353-666 |
| Cow position: | chr4:49743135-49742843 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 353-675 |
| Cow position: | chr4:29232553-29232237 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 126, 74 |
| Conread position: | 353-675 |
| Cow position: | chr4:44425698-44425373 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-697 |
| Cow position: | chr4:25189066-25188730 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 354-709 |
| Cow position: | chr4:4125747-4126088 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 355-566 |
| Cow position: | chr4:37343553-37343346 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 75 |
| Conread position: | 355-666 |
| Cow position: | chr4:18283488-18283792 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 355-678 |
| Cow position: | chr4:45383232-45382916 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 75 |
| Conread position: | 355-715 |
| Cow position: | chr4:38951500-38951873 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 270 |
| Conread position: | 355-716 |
| Cow position: | chr4:3901947-3901589 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 74 |
| Conread position: | 356-636 |
| Cow position: | chr4:43283990-43283716 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 97, 28 |
| Conread position: | 361-624 |
| Cow position: | chr4:1226370-1226625 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 372-672 |
| Cow position: | chr4:16942079-16942387 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 254 |
| Conread position: | 373-601 |
| Cow position: | chr4:56263557-56263779 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 385-706 |
| Cow position: | chr4:32843821-32844144 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 397-588 |
| Cow position: | chr4:32773598-32773783 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 408-711 |
| Cow position: | chr4:64963280-64963580 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 27 |
| Conread position: | 435-601 |
| Cow position: | chr4:25153262-25153097 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 436-668 |
| Cow position: | chr4:23681107-23681335 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 436-686 |
| Cow position: | chr4:49765163-49764906 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 182 |
| Conread position: | 438-602 |
| Cow position: | chr4:17093922-17094088 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 440-684 |
| Cow position: | chr4:59265532-59265773 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 452-640 |
| Cow position: | chr4:52516804-52516613 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 176 |
| Conread position: | 453-675 |
| Cow position: | chr4:5208016-5207793 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 453-675 |
| Cow position: | chr4:57644066-57643847 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 193, 21 |
| Conread position: | 455-637 |
| Cow position: | chr4:565085-565268 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 171 |
| Conread position: | 457-718 |
| Cow position: | chr4:59577697-59577959 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 15, 124 |
| Conread position: | 461-596 |
| Cow position: | chr4:60499928-60499792 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 482-637 |
| Cow position: | chr4:58787229-58787384 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 482-656 |
| Cow position: | chr4:39337321-39337145 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 152 |
| Conread position: | 482-668 |
| Cow position: | chr4:45224426-45224608 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 152, 7 |
| Conread position: | 483-673 |
| Cow position: | chr4:165831-166019 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 175, 127 |
| Conread position: | 483-678 |
| Cow position: | chr4:40249588-40249786 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 6, 129 |
| Conread position: | 484-636 |
| Cow position: | chr4:4032092-4031941 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 139 |
| Conread position: | 485-695 |
| Cow position: | chr4:42364800-42365007 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 140 |
| Conread position: | 486-721 |
| Cow position: | chr4:4020748-4020977 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 157, 54 |
| Conread position: | 504-721 |
| Cow position: | chr4:181697-181482 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 139, 123 |
| Conread position: | 505-666 |
| Cow position: | chr4:58789948-58789789 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 117, 38 |
Show alignments to all cow chromosomes.