Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 314-586 |
| Cow position: | chr5:8230517-8230797 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 337-594 |
| Cow position: | chr5:66584312-66584566 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 234, 16 |
| Conread position: | 337-607 |
| Cow position: | chr5:7394054-7393785 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 337-608 |
| Cow position: | chr5:53582504-53582773 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 337-636 |
| Cow position: | chr5:63252161-63252457 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 337-670 |
| Cow position: | chr5:59118066-59117741 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 337-710 |
| Cow position: | chr5:42709653-42709995 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 337-711 |
| Cow position: | chr5:59457703-59458080 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 337-754 |
| Cow position: | chr5:20840300-20840708 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 340-591 |
| Cow position: | chr5:8760824-8761070 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 155, 8 |
| Conread position: | 341-705 |
| Cow position: | chr5:49610147-49609793 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 343-601 |
| Cow position: | chr5:71528021-71528271 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 248, 10 |
| Conread position: | 343-675 |
| Cow position: | chr5:47837873-47838206 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 343-706 |
| Cow position: | chr5:3396470-3396825 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 15 |
| Conread position: | 343-722 |
| Cow position: | chr5:63395610-63395233 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 350-623 |
| Cow position: | chr5:12690800-12691083 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 350-666 |
| Cow position: | chr5:31249552-31249245 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 351-612 |
| Cow position: | chr5:59042542-59042796 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 352-573 |
| Cow position: | chr5:43401075-43401285 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 352-598 |
| Cow position: | chr5:17732134-17732372 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 143 |
| Conread position: | 352-625 |
| Cow position: | chr5:45710383-45710118 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 352-678 |
| Cow position: | chr5:16177113-16177427 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 353-593 |
| Cow position: | chr5:31486613-31486848 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 79 |
| Conread position: | 353-608 |
| Cow position: | chr5:42140368-42140611 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 353-664 |
| Cow position: | chr5:39338814-39338508 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 353-666 |
| Cow position: | chr5:26464651-26464959 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 353-666 |
| Cow position: | chr5:59044821-59045124 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 353-675 |
| Cow position: | chr5:18391813-18391503 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 353-675 |
| Cow position: | chr5:34025097-34024781 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 353-675 |
| Cow position: | chr5:44696946-44697264 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 353-675 |
| Cow position: | chr5:47767708-47768025 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 49, 71 |
| Conread position: | 353-679 |
| Cow position: | chr5:25479462-25479143 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 353-679 |
| Cow position: | chr5:49879399-49879080 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 353-709 |
| Cow position: | chr5:45565275-45564918 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 353-711 |
| Cow position: | chr5:43087077-43087447 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 353-712 |
| Cow position: | chr5:2188820-2188470 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 126, 21 |
| Conread position: | 355-678 |
| Cow position: | chr5:6390639-6390954 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 134, 75 |
| Conread position: | 355-689 |
| Cow position: | chr5:63793563-63793885 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 356-671 |
| Cow position: | chr5:41330415-41330727 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 375-661 |
| Cow position: | chr5:45196669-45196385 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 389-637 |
| Cow position: | chr5:40388456-40388698 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 435-722 |
| Cow position: | chr5:60922197-60922481 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 206, 47 |
| Conread position: | 436-718 |
| Cow position: | chr5:9520335-9520607 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 44 |
| Conread position: | 440-638 |
| Cow position: | chr5:59331961-59331767 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 452-589 |
| Cow position: | chr5:73564428-73564566 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 452-603 |
| Cow position: | chr5:60041653-60041805 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 452-608 |
| Cow position: | chr5:8132864-8132707 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 452-612 |
| Cow position: | chr5:59096571-59096729 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 453-601 |
| Cow position: | chr5:60277837-60277984 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 455-621 |
| Cow position: | chr5:51822763-51822595 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 456-708 |
| Cow position: | chr5:43658800-43658543 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 184, 174 |
| Conread position: | 457-666 |
| Cow position: | chr5:56269590-56269382 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 469-706 |
| Cow position: | chr5:63078318-63078550 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 472-687 |
| Cow position: | chr5:64190694-64190908 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 477-655 |
| Cow position: | chr5:59053391-59053569 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 169, 148 |
| Conread position: | 477-666 |
| Cow position: | chr5:73566860-73567047 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 103 |
| Conread position: | 477-672 |
| Cow position: | chr5:39323421-39323231 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 126, 112 |
| Conread position: | 481-695 |
| Cow position: | chr5:39324573-39324352 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 132 |
| Conread position: | 483-644 |
| Cow position: | chr5:17391634-17391790 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 123, 100 |
| Conread position: | 483-718 |
| Cow position: | chr5:47837056-47836819 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 495-611 |
| Cow position: | chr5:2489495-2489610 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 496-673 |
| Cow position: | chr5:20848256-20848078 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 497-716 |
| Cow position: | chr5:767042-767262 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 501-675 |
| Cow position: | chr5:57628820-57628645 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 141, 119 |
| Conread position: | 502-666 |
| Cow position: | chr5:47460018-47459856 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 143, 122 |
Show alignments to all cow chromosomes.