Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 337-678 |
| Cow position: | chr6:29838870-29838534 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 337-693 |
| Cow position: | chr6:69053831-69054193 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 337-702 |
| Cow position: | chr6:69035171-69035521 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 337-718 |
| Cow position: | chr6:16611587-16611981 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 337-718 |
| Cow position: | chr6:61811641-61811290 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 337-747 |
| Cow position: | chr6:32687906-32688304 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 26 |
| Conread position: | 338-608 |
| Cow position: | chr6:67981409-67981670 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 118, 5 |
| Conread position: | 338-637 |
| Cow position: | chr6:63029068-63028776 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 338-669 |
| Cow position: | chr6:28598363-28598708 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 224, 15 |
| Conread position: | 343-612 |
| Cow position: | chr6:51395956-51396217 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-675 |
| Cow position: | chr6:65706232-65706557 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-711 |
| Cow position: | chr6:29678758-29679130 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 352-606 |
| Cow position: | chr6:5338371-5338622 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 49 |
| Conread position: | 352-711 |
| Cow position: | chr6:35751251-35751597 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 352-716 |
| Cow position: | chr6:35187750-35187397 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 71 |
| Conread position: | 353-597 |
| Cow position: | chr6:16548798-16549056 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 185 |
| Conread position: | 353-627 |
| Cow position: | chr6:16552008-16552281 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 353-637 |
| Cow position: | chr6:18414055-18414334 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-666 |
| Cow position: | chr6:17291490-17291798 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr6:4387680-4387357 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 68 |
| Conread position: | 355-659 |
| Cow position: | chr6:26637746-26638042 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 356-625 |
| Cow position: | chr6:22817631-22817892 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 356-644 |
| Cow position: | chr6:44757758-44758040 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 356-714 |
| Cow position: | chr6:60415088-60414750 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 357-528 |
| Cow position: | chr6:8018426-8018597 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 104, 74 |
| Conread position: | 357-666 |
| Cow position: | chr6:44231924-44232226 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 358-678 |
| Cow position: | chr6:417698-418011 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 121, 38 |
| Conread position: | 361-643 |
| Cow position: | chr6:59218915-59218642 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 369-711 |
| Cow position: | chr6:2592646-2592966 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 110, 61 |
| Conread position: | 371-636 |
| Cow position: | chr6:55972602-55972338 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 373-613 |
| Cow position: | chr6:44610283-44610052 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 437-722 |
| Cow position: | chr6:43603209-43603497 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 452-608 |
| Cow position: | chr6:8957182-8957029 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 452-625 |
| Cow position: | chr6:68263585-68263757 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 452-666 |
| Cow position: | chr6:28440794-28440582 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 93 |
| Conread position: | 452-666 |
| Cow position: | chr6:55503314-55503097 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 452-666 |
| Cow position: | chr6:68590821-68590605 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 452-694 |
| Cow position: | chr6:62583175-62582937 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 455-758 |
| Cow position: | chr6:16184397-16184691 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 455-758 |
| Cow position: | chr6:63012040-63011745 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 25 |
| Conread position: | 462-687 |
| Cow position: | chr6:15264680-15264907 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 471-699 |
| Cow position: | chr6:53264565-53264345 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 157 |
| Conread position: | 477-666 |
| Cow position: | chr6:20284727-20284544 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 177, 49 |
| Conread position: | 477-666 |
| Cow position: | chr6:26554321-26554127 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 128, 155 |
| Conread position: | 522-693 |
| Cow position: | chr6:8069687-8069854 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 120, 16 |
Show alignments to all cow chromosomes.