Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 321-637 |
| Cow position: | chr8:57724253-57724562 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 322-599 |
| Cow position: | chr8:16231729-16231438 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 329-609 |
| Cow position: | chr8:37442034-37441745 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 337-575 |
| Cow position: | chr8:59224311-59224538 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 337-593 |
| Cow position: | chr8:5671077-5671328 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 180, 19 |
| Conread position: | 337-695 |
| Cow position: | chr8:1649100-1649445 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 337-727 |
| Cow position: | chr8:22039742-22040116 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 16 |
| Conread position: | 337-737 |
| Cow position: | chr8:19024667-19025069 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 338-718 |
| Cow position: | chr8:7004077-7004442 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 340-712 |
| Cow position: | chr8:20660785-20661150 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 343-532 |
| Cow position: | chr8:31732204-31732015 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 343-597 |
| Cow position: | chr8:12084627-12084381 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 350-678 |
| Cow position: | chr8:24688101-24688431 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 352-568 |
| Cow position: | chr8:14961423-14961212 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 353-573 |
| Cow position: | chr8:51902873-51902643 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 226 |
| Conread position: | 353-619 |
| Cow position: | chr8:35558968-35558707 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-662 |
| Cow position: | chr8:12210309-12210616 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-675 |
| Cow position: | chr8:45409727-45410052 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 353-687 |
| Cow position: | chr8:1443141-1442812 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 355-644 |
| Cow position: | chr8:848768-848494 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 355-747 |
| Cow position: | chr8:40114601-40114229 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 56 |
| Conread position: | 356-673 |
| Cow position: | chr8:48454677-48455002 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 163 |
| Conread position: | 357-573 |
| Cow position: | chr8:24959594-24959384 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 357-711 |
| Cow position: | chr8:60000750-60001099 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 359-637 |
| Cow position: | chr8:48674316-48674045 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 361-590 |
| Cow position: | chr8:42640707-42640943 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 368-610 |
| Cow position: | chr8:35479407-35479636 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 368-696 |
| Cow position: | chr8:60577963-60577637 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 369-640 |
| Cow position: | chr8:39059922-39059662 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 382-737 |
| Cow position: | chr8:23352753-23352391 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 435-622 |
| Cow position: | chr8:9293012-9292826 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 436-666 |
| Cow position: | chr8:17705406-17705176 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 212 |
| Conread position: | 436-679 |
| Cow position: | chr8:34835944-34835707 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 14, 189 |
| Conread position: | 436-719 |
| Cow position: | chr8:49672924-49673213 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 452-601 |
| Cow position: | chr8:51963933-51963783 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 452-640 |
| Cow position: | chr8:49882002-49882192 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 452-666 |
| Cow position: | chr8:49987052-49987271 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 179 |
| Conread position: | 454-644 |
| Cow position: | chr8:811817-811630 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 457-666 |
| Cow position: | chr8:5246919-5246710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 458-670 |
| Cow position: | chr8:25797724-25797513 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 462-675 |
| Cow position: | chr8:17430899-17430686 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 462-695 |
| Cow position: | chr8:33160937-33160703 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 17, 160 |
| Conread position: | 471-711 |
| Cow position: | chr8:46794604-46794364 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 11 |
| Conread position: | 474-705 |
| Cow position: | chr8:4060242-4060474 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 151 |
| Conread position: | 477-674 |
| Cow position: | chr8:1653870-1653674 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 169, 134 |
| Conread position: | 485-720 |
| Cow position: | chr8:9072916-9073145 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 508-676 |
| Cow position: | chr8:6871423-6871588 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 508-711 |
| Cow position: | chr8:21767669-21767470 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 13, 106 |
Show alignments to all cow chromosomes.