Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 319-711 |
| Cow position: | chr9:3873386-3873796 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 26 |
| Conread position: | 337-569 |
| Cow position: | chr9:12861152-12861373 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-579 |
| Cow position: | chr9:44917690-44917446 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 337-599 |
| Cow position: | chr9:25436963-25437226 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 337-611 |
| Cow position: | chr9:9561746-9562013 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 337-666 |
| Cow position: | chr9:44559863-44560185 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 337-666 |
| Cow position: | chr9:44718052-44718373 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 337-725 |
| Cow position: | chr9:10896541-10896932 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 337-738 |
| Cow position: | chr9:22953328-22953732 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 338-535 |
| Cow position: | chr9:36713109-36713299 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 343-604 |
| Cow position: | chr9:48610362-48610616 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 343-664 |
| Cow position: | chr9:31643940-31644268 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 343-679 |
| Cow position: | chr9:20984217-20983886 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 351-678 |
| Cow position: | chr9:7094129-7093811 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 352-666 |
| Cow position: | chr9:10773017-10772724 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 352-709 |
| Cow position: | chr9:13453434-13453781 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 71 |
| Conread position: | 352-717 |
| Cow position: | chr9:62925588-62925230 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 353-602 |
| Cow position: | chr9:8203910-8204153 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 353-608 |
| Cow position: | chr9:47438797-47439050 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 71 |
| Conread position: | 353-666 |
| Cow position: | chr9:25032475-25032777 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 353-666 |
| Cow position: | chr9:32609137-32609441 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 353-695 |
| Cow position: | chr9:28281899-28281556 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 82 |
| Conread position: | 354-678 |
| Cow position: | chr9:55033296-55032975 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 355-628 |
| Cow position: | chr9:6655930-6656195 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 355-644 |
| Cow position: | chr9:10894608-10894337 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 355-672 |
| Cow position: | chr9:58469879-58469575 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 38 |
| Conread position: | 356-664 |
| Cow position: | chr9:11418189-11418490 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 356-706 |
| Cow position: | chr9:28249024-28248657 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 357-656 |
| Cow position: | chr9:6164004-6163703 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 258 |
| Conread position: | 361-637 |
| Cow position: | chr9:6316991-6317267 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 438-620 |
| Cow position: | chr9:44559683-44559507 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 438-711 |
| Cow position: | chr9:34167265-34167520 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 452-666 |
| Cow position: | chr9:36420844-36420634 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 162 |
| Conread position: | 477-639 |
| Cow position: | chr9:17989854-17990017 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 102, 149 |
| Conread position: | 477-668 |
| Cow position: | chr9:49582723-49582912 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 477-672 |
| Cow position: | chr9:10571464-10571657 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 480-673 |
| Cow position: | chr9:28599198-28599391 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 167, 72 |
| Conread position: | 482-667 |
| Cow position: | chr9:6721603-6721787 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 482-675 |
| Cow position: | chr9:9390954-9390750 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 483-685 |
| Cow position: | chr9:47520141-47520333 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 192, 98 |
| Conread position: | 486-600 |
| Cow position: | chr9:7405382-7405496 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-664 |
| Cow position: | chr9:102233-102398 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
Show alignments to all cow chromosomes.