Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 330-637 |
| Cow position: | chrX:29901460-29901163 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 337-578 |
| Cow position: | chrX:112532-112297 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 337-618 |
| Cow position: | chrX:31919014-31919286 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 152, 16 |
| Conread position: | 337-673 |
| Cow position: | chrX:31908813-31909149 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 337-695 |
| Cow position: | chrX:42915823-42915489 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 304, 18 |
| Conread position: | 337-710 |
| Cow position: | chrX:1340373-1340737 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 337-711 |
| Cow position: | chrX:42549865-42549509 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 337-714 |
| Cow position: | chrX:13816981-13816618 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 16 |
| Conread position: | 337-718 |
| Cow position: | chrX:24631101-24630734 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-767 |
| Cow position: | chrX:26352148-26352590 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 337-772 |
| Cow position: | chrX:25435154-25434719 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 338-678 |
| Cow position: | chrX:11572109-11571787 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 338-718 |
| Cow position: | chrX:6815931-6815535 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 338-720 |
| Cow position: | chrX:38740054-38739681 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 343-608 |
| Cow position: | chrX:11840622-11840876 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chrX:42559268-42559586 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-708 |
| Cow position: | chrX:31444012-31443670 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 352-668 |
| Cow position: | chrX:29774746-29774439 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 353-608 |
| Cow position: | chrX:33783081-33782837 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 353-609 |
| Cow position: | chrX:802995-802752 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 353-637 |
| Cow position: | chrX:11810084-11810366 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 353-672 |
| Cow position: | chrX:44191628-44191947 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 353-673 |
| Cow position: | chrX:39097092-39097392 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 353-675 |
| Cow position: | chrX:42066537-42066220 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 353-675 |
| Cow position: | chrX:42558457-42558145 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-695 |
| Cow position: | chrX:1151410-1151734 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 80 |
| Conread position: | 354-601 |
| Cow position: | chrX:219935-219692 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 355-610 |
| Cow position: | chrX:38138984-38139234 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 355-668 |
| Cow position: | chrX:25219243-25218945 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 288, 67 |
| Conread position: | 355-695 |
| Cow position: | chrX:23364183-23364519 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 355-754 |
| Cow position: | chrX:21177670-21178061 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 36 |
| Conread position: | 357-608 |
| Cow position: | chrX:3040148-3040395 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 364-706 |
| Cow position: | chrX:25236817-25237144 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 70 |
| Conread position: | 374-637 |
| Cow position: | chrX:41930114-41929856 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 5, 51 |
| Conread position: | 436-718 |
| Cow position: | chrX:21242871-21243161 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 452-608 |
| Cow position: | chrX:25441889-25442047 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 452-644 |
| Cow position: | chrX:31465974-31466163 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 477-644 |
| Cow position: | chrX:32568521-32568688 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 128, 151 |
| Conread position: | 477-675 |
| Cow position: | chrX:34863338-34863532 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 169, 25 |
| Conread position: | 478-722 |
| Cow position: | chrX:15370050-15370313 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 506-668 |
| Cow position: | chrX:38737317-38737477 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 517-722 |
| Cow position: | chrX:18507512-18507715 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 518-665 |
| Cow position: | chrX:30127959-30128107 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 118, 50 |
| Conread position: | 521-718 |
| Cow position: | chrX:25227484-25227289 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 122, 101 |
| Conread position: | 523-665 |
| Cow position: | chrX:17482984-17483125 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.