Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 164-813 |
| Cow position: | chr13:39984256-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 207-820 |
| Cow position: | chr13:56333777-56334396 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 380 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 152, 134 |
| Conread position: | 208-896 |
| Cow position: | chr13:39984214-39984902 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-788 |
| Cow position: | chr13:22125164-22125739 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 211-856 |
| Cow position: | chr13:24162890-24163534 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 376 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 221-855 |
| Cow position: | chr13:39983978-39984609 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 222-551 |
| Cow position: | chr13:56292122-56291792 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 255, 0 |
| Conread position: | 225-855 |
| Cow position: | chr13:39983896-39984525 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 226-654 |
| Cow position: | chr13:56292198-56291776 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 8 |
| Conread position: | 228-901 |
| Cow position: | chr13:56333714-56334393 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 420 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 134, 149 |
| Conread position: | 240-889 |
| Cow position: | chr13:56292850-56292200 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 397 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 250-835 |
| Cow position: | chr13:24162423-24163008 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 357 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 250-886 |
| Cow position: | chr13:22124865-22125501 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 372 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 233, 227 |
| Conread position: | 253-855 |
| Cow position: | chr13:39984091-39984693 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-894 |
| Cow position: | chr13:56333571-56334221 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 256-857 |
| Cow position: | chr13:22125040-22125640 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 365 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 256-857 |
| Cow position: | chr13:24162766-24163366 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 270-686 |
| Cow position: | chr13:56317303-56317711 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 271-886 |
| Cow position: | chr13:24162696-24163311 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 274-833 |
| Cow position: | chr13:24162867-24163426 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 281-887 |
| Cow position: | chr13:24162538-24163144 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 279 |
| Conread position: | 289-893 |
| Cow position: | chr13:39984211-39984815 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 290-744 |
| Cow position: | chr13:56317928-56318385 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 153, 135 |
| Conread position: | 290-905 |
| Cow position: | chr13:56292385-56291773 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 141 |
| Conread position: | 291-735 |
| Cow position: | chr13:39930709-39931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 143 |
| Conread position: | 291-900 |
| Cow position: | chr13:56333693-56334311 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 323 |
| Conread position: | 292-833 |
| Cow position: | chr13:22125159-22125700 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-835 |
| Cow position: | chr13:22124739-22125282 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 90 |
| Conread position: | 292-886 |
| Cow position: | chr13:22124991-22125585 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 115 |
| Conread position: | 297-844 |
| Cow position: | chr13:39930631-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 137 |
| Conread position: | 298-887 |
| Cow position: | chr13:22124827-22125418 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 264 |
| Conread position: | 301-889 |
| Cow position: | chr13:39983887-39984475 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-894 |
| Cow position: | chr13:39983722-39984312 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 355 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 310-889 |
| Cow position: | chr13:39983812-39984391 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 325-893 |
| Cow position: | chr13:56292434-56291871 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 215 |
| Conread position: | 337-893 |
| Cow position: | chr13:39930587-39931143 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 346-883 |
| Cow position: | chr13:56317295-56317824 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 367-901 |
| Cow position: | chr13:56333517-56334051 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 412-731 |
| Cow position: | chr13:56333184-56333503 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 418-893 |
| Cow position: | chr13:22124697-22125172 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 418-893 |
| Cow position: | chr13:24162423-24162898 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 113 |
| Conread position: | 418-893 |
| Cow position: | chr13:39930584-39931059 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 119 |
| Conread position: | 459-811 |
| Cow position: | chr13:56317929-56318287 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 478-905 |
| Cow position: | chr13:39983812-39984240 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 533-855 |
| Cow position: | chr13:24162454-24162776 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 543-894 |
| Cow position: | chr13:56317929-56318286 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 575-854 |
| Cow position: | chr13:56317356-56317629 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 207, 113 |
| Conread position: | 580-893 |
| Cow position: | chr13:22124691-22125004 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 133 |
| Conread position: | 580-893 |
| Cow position: | chr13:24162417-24162730 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.