Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 165-894 |
| Cow position: | |
| Alignm length: | 735 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 171-770 |
| Cow position: | |
| Alignm length: | 605 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 204-893 |
| Cow position: | |
| Alignm length: | 695 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 205-809 |
| Cow position: | |
| Alignm length: | 605 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-514 |
| Cow position: | |
| Alignm length: | 308 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-849 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 207-872 |
| Cow position: | |
| Alignm length: | 666 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 208-886 |
| Cow position: | |
| Alignm length: | 681 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 215-894 |
| Cow position: | |
| Alignm length: | 681 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 219-875 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 311 |
| Conread position: | 221-839 |
| Cow position: | |
| Alignm length: | 623 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 221-854 |
| Cow position: | |
| Alignm length: | 635 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 431 |
| Conread position: | 221-893 |
| Cow position: | |
| Alignm length: | 674 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 547, 331 |
| Conread position: | 222-917 |
| Cow position: | |
| Alignm length: | 699 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 224-490 |
| Cow position: | |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 224-563 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 224-823 |
| Cow position: | |
| Alignm length: | 600 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 224-854 |
| Cow position: | |
| Alignm length: | 632 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 132 |
| Conread position: | 224-855 |
| Cow position: | |
| Alignm length: | 637 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 224-893 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 224-893 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 225-655 |
| Cow position: | |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 225-894 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 543, 172 |
| Conread position: | 226-645 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 226-685 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 226-884 |
| Cow position: | |
| Alignm length: | 660 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 227-874 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 307 |
| Conread position: | 227-893 |
| Cow position: | |
| Alignm length: | 669 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 227-905 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-559 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-660 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 59, 70 |
| Conread position: | 228-822 |
| Cow position: | |
| Alignm length: | 597 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 228-824 |
| Cow position: | |
| Alignm length: | 599 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 553 |
| Conread position: | 228-827 |
| Cow position: | |
| Alignm length: | 600 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 547, 0 |
| Conread position: | 228-854 |
| Cow position: | |
| Alignm length: | 631 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 228-857 |
| Cow position: | |
| Alignm length: | 636 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 131 |
| Conread position: | 228-858 |
| Cow position: | |
| Alignm length: | 634 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 228-893 |
| Cow position: | |
| Alignm length: | 666 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-893 |
| Cow position: | |
| Alignm length: | 670 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 210 |
| Conread position: | 228-894 |
| Cow position: | |
| Alignm length: | 670 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 228-894 |
| Cow position: | |
| Alignm length: | 667 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-570 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 42 |
| Conread position: | 229-647 |
| Cow position: | |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 229-886 |
| Cow position: | |
| Alignm length: | 658 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 229-893 |
| Cow position: | |
| Alignm length: | 667 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 219 |
| Conread position: | 229-894 |
| Cow position: | |
| Alignm length: | 670 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 229-894 |
| Cow position: | |
| Alignm length: | 667 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 390 |
| Conread position: | 229-897 |
| Cow position: | |
| Alignm length: | 670 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 209 |
| Conread position: | 229-917 |
| Cow position: | |
| Alignm length: | 689 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-894 |
| Cow position: | |
| Alignm length: | 667 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 238-747 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 187 |
| Conread position: | 238-847 |
| Cow position: | |
| Alignm length: | 611 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 94 |
| Conread position: | 238-886 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-894 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 297 |
| Conread position: | 238-894 |
| Cow position: | |
| Alignm length: | 660 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 240-605 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 129 |
| Conread position: | 242-921 |
| Cow position: | |
| Alignm length: | 681 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 661, 670 |
| Conread position: | 244-854 |
| Cow position: | |
| Alignm length: | 615 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 246-653 |
| Cow position: | |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 246-784 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 249-894 |
| Cow position: | |
| Alignm length: | 647 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 250-642 |
| Cow position: | |
| Alignm length: | 393 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-917 |
| Cow position: | |
| Alignm length: | 668 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-873 |
| Cow position: | |
| Alignm length: | 618 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 221 |
| Conread position: | 282-855 |
| Cow position: | |
| Alignm length: | 579 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 169 |
| Conread position: | 285-853 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 516, 0 |
| Conread position: | 291-855 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 291-894 |
| Cow position: | |
| Alignm length: | 604 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 291-897 |
| Cow position: | |
| Alignm length: | 608 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 484 |
| Conread position: | 291-909 |
| Cow position: | |
| Alignm length: | 619 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-778 |
| Cow position: | |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 80 |
| Conread position: | 292-855 |
| Cow position: | |
| Alignm length: | 568 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 298-739 |
| Cow position: | |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 298-855 |
| Cow position: | |
| Alignm length: | 560 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 229 |
| Conread position: | 307-894 |
| Cow position: | |
| Alignm length: | 590 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 304 |
| Conread position: | 310-893 |
| Cow position: | |
| Alignm length: | 584 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 310-906 |
| Cow position: | |
| Alignm length: | 598 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 593, 322 |
| Conread position: | 312-894 |
| Cow position: | |
| Alignm length: | 586 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 306 |
| Conread position: | 332-917 |
| Cow position: | |
| Alignm length: | 589 |
| Alignm identity: | 357 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 360-905 |
| Cow position: | |
| Alignm length: | 549 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 376-881 |
| Cow position: | |
| Alignm length: | 507 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 81 |
| Conread position: | 380-819 |
| Cow position: | |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 394-905 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 400-854 |
| Cow position: | |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 407-917 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 458-894 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 334 |
| Conread position: | 460-906 |
| Cow position: | |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 81 |
| Conread position: | 467-872 |
| Cow position: | |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 478-917 |
| Cow position: | |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-896 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 96, 109 |
| Conread position: | 617-893 |
| Cow position: | |
| Alignm length: | 277 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 648-917 |
| Cow position: | |
| Alignm length: | 270 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.