Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070010.5

Conread position: 165-894
Cow position: chr19:23613875-23614604 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 171-770
Cow position: chr19:23614553-23615148 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 204-893
Cow position: chr19:23613746-23614435 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 74

Conread position: 205-809
Cow position: chr19:14940471-14941075 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 207-514
Cow position: chr19:14948318-14948011 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 191
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 207-849
Cow position: chr19:23649787-23650429 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 207-872
Cow position: chr19:14940389-14941054 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 208-886
Cow position: chr19:23613834-23614512 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 54

Conread position: 215-894
Cow position: chr19:23649375-23650054 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 219-875
Cow position: chr19:23614181-23614837 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 311

Conread position: 221-839
Cow position: chr19:20635635-20635020 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 8

Conread position: 221-854
Cow position: chr19:14939983-14940616 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 431

Conread position: 221-893
Cow position: chr19:14960480-14959810 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 547, 331

Conread position: 222-917
Cow position: chr19:20677611-20678306 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 49

Conread position: 224-490
Cow position: chr19:23597447-23597713 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 27

Conread position: 224-563
Cow position: chr19:14959160-14958827 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 38, 0

Conread position: 224-823
Cow position: chr19:14960309-14959714 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 224-854
Cow position: chr19:20678033-20678663 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 132

Conread position: 224-855
Cow position: chr19:20677949-20678580 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 224-893
Cow position: chr19:23649468-23650137 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 224-893
Cow position: chr19:23649552-23650221 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 48

Conread position: 225-655
Cow position: chr19:14959243-14958819 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 36

Conread position: 225-894
Cow position: chr19:23596863-23597529 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 543, 172

Conread position: 226-645
Cow position: chr19:43570056-43569641 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 0

Conread position: 226-685
Cow position: chr19:14948464-14948008 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 226-884
Cow position: chr19:14959652-14959010 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 227-874
Cow position: chr19:23613349-23613996 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 307

Conread position: 227-893
Cow position: chr19:14960388-14959728 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 227-905
Cow position: chr19:23613433-23614111 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 228-559
Cow position: chr19:14940746-14941077 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 228-660
Cow position: chr19:20678373-20678802 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 274
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 59, 70

Conread position: 228-822
Cow position: chr19:23614526-23615118 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 30

Conread position: 228-824
Cow position: chr19:23597115-23597711 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 553

Conread position: 228-827
Cow position: chr19:20635547-20634951 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 547, 0

Conread position: 228-854
Cow position: chr19:23613518-23614144 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 35

Conread position: 228-857
Cow position: chr19:20677869-20678498 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 131

Conread position: 228-858
Cow position: chr19:23614358-23614988 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 57

Conread position: 228-893
Cow position: chr19:14940242-14940907 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 228-893
Cow position: chr19:14959567-14958917 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 210

Conread position: 228-894
Cow position: chr19:23614106-23614772 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 50

Conread position: 228-894
Cow position: chr19:23649640-23650306 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-570
Cow position: chr19:23650145-23650486 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 30, 42

Conread position: 229-647
Cow position: chr19:23650061-23650479 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 229-886
Cow position: chr19:43570379-43569732 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 229-893
Cow position: chr19:23649725-23650389 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 219

Conread position: 229-894
Cow position: chr19:20635715-20635049 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 34

Conread position: 229-894
Cow position: chr19:23613603-23614268 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 390

Conread position: 229-897
Cow position: chr19:23614023-23614691 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 209

Conread position: 229-917
Cow position: chr19:14940327-14941015 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 230-894
Cow position: chr19:43570461-43569808 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 39

Conread position: 238-747
Cow position: chr19:23597209-23597718 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 187

Conread position: 238-847
Cow position: chr19:23649902-23650509 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 94

Conread position: 238-886
Cow position: chr19:23649314-23649962 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 238-894
Cow position: chr19:23613696-23614352 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 297

Conread position: 238-894
Cow position: chr19:23614452-23615108 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 40

Conread position: 240-605
Cow position: chr19:14948369-14948004 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 129

Conread position: 242-921
Cow position: chr19:14940088-14940767 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 661, 670

Conread position: 244-854
Cow position: chr19:23597047-23597658 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 246-653
Cow position: chr19:14916150-14916541 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 266
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 15, 27

Conread position: 246-784
Cow position: chr19:14915898-14916432 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 333
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 29, 60

Conread position: 249-894
Cow position: chr19:14959712-14959084 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 28

Conread position: 250-642
Cow position: chr19:14940684-14941076 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 250-917
Cow position: chr19:14940180-14940847 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 257-873
Cow position: chr19:23596810-23597424 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 221

Conread position: 282-855
Cow position: chr19:20677839-20678412 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 169

Conread position: 285-853
Cow position: chr19:43570249-43569685 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 516, 0

Conread position: 291-855
Cow position: chr19:20677596-20678160 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 71

Conread position: 291-894
Cow position: chr19:23597013-23597613 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 291-897
Cow position: chr19:23614337-23614943 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 489, 484

Conread position: 291-909
Cow position: chr19:23649283-23649901 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 292-778
Cow position: chr19:14948484-14947999 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 80

Conread position: 292-855
Cow position: chr19:20677513-20678076 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 69

Conread position: 298-739
Cow position: chr19:14959254-14958819 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 298-855
Cow position: chr19:20677771-20678328 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 229

Conread position: 307-894
Cow position: chr19:20677360-20677947 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 304

Conread position: 310-893
Cow position: chr19:14939988-14940571 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 310-906
Cow position: chr19:14960475-14959880 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 593, 322

Conread position: 312-894
Cow position: chr19:23613350-23613932 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 306

Conread position: 332-917
Cow position: chr19:20677304-20677886 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 357
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 109, 55

Conread position: 360-905
Cow position: chr19:23613314-23613860 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 19

Conread position: 376-881
Cow position: chr19:14948484-14947979 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 499, 81

Conread position: 380-819
Cow position: chr19:14959256-14958823 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 394-905
Cow position: chr19:14939988-14940499 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 400-854
Cow position: chr19:14915967-14916418 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 299
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 37, 62

Conread position: 407-917
Cow position: chr19:43570452-43569953 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 55

Conread position: 458-894
Cow position: chr19:23649282-23649718 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 334

Conread position: 460-906
Cow position: chr19:14948484-14948039 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 81

Conread position: 467-872
Cow position: chr19:14915952-14916353 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 264
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 54, 6

Conread position: 478-917
Cow position: chr19:14939988-14940427 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 558-896
Cow position: chr19:14939816-14940154 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 222
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 96, 109

Conread position: 617-893
Cow position: chr19:23596835-23597108 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 197, 0

Conread position: 648-917
Cow position: chr19:23613350-23613619 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.