Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 206-893 |
| Cow position: | chr2:82799504-82800191 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-886 |
| Cow position: | chr2:78754243-78754902 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 416 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 211-845 |
| Cow position: | chr2:5874861-5874229 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 391 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 224-739 |
| Cow position: | chr2:48689546-48689031 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 224-854 |
| Cow position: | chr2:78754828-78755457 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 0 |
| Conread position: | 224-854 |
| Cow position: | chr2:78755164-78755790 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 173 |
| Conread position: | 228-917 |
| Cow position: | chr2:82799694-82800383 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 283 |
| Conread position: | 229-730 |
| Cow position: | chr2:82799947-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 289 |
| Conread position: | 229-823 |
| Cow position: | chr2:78755837-78756428 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 277 |
| Conread position: | 229-889 |
| Cow position: | chr2:82799611-82800271 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 615, 625 |
| Conread position: | 229-893 |
| Cow position: | chr2:82799779-82800443 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 285 |
| Conread position: | 229-893 |
| Cow position: | chr2:86465435-86466099 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 229-905 |
| Cow position: | chr2:78755336-78756008 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 231-849 |
| Cow position: | chr2:78754100-78754712 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 237-858 |
| Cow position: | chr2:86465359-86465980 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 322 |
| Conread position: | 238-855 |
| Cow position: | chr2:78755512-78756127 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 131 |
| Conread position: | 238-855 |
| Cow position: | chr2:86465528-86466145 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 374 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 238-901 |
| Cow position: | chr2:86465192-86465855 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 279 |
| Conread position: | 239-889 |
| Cow position: | chr2:82799453-82800103 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 291 |
| Conread position: | 244-846 |
| Cow position: | chr2:5875166-5874564 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 244-894 |
| Cow position: | chr2:78754695-78755330 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 256-906 |
| Cow position: | chr2:5874901-5874252 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 378 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 273-773 |
| Cow position: | chr2:86465815-86466312 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 279, 274 |
| Conread position: | 282-677 |
| Cow position: | chr2:5874540-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 228, 235 |
| Conread position: | 283-922 |
| Cow position: | chr2:78755723-78756360 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 291-846 |
| Cow position: | chr2:5875035-5874480 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 341 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 291-855 |
| Cow position: | chr2:78754811-78755374 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 0 |
| Conread position: | 291-894 |
| Cow position: | chr2:86465077-86465680 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 176 |
| Conread position: | 297-773 |
| Cow position: | chr2:86465671-86466147 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 262 |
| Conread position: | 297-859 |
| Cow position: | chr2:86465335-86465897 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 233 |
| Conread position: | 297-894 |
| Cow position: | chr2:5874945-5874348 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 299-887 |
| Cow position: | chr2:86465001-86465589 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 356 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 248, 252 |
| Conread position: | 302-814 |
| Cow position: | chr2:82799936-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 303-680 |
| Cow position: | chr2:48689550-48689174 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 303-742 |
| Cow position: | chr2:86465761-86466200 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 83 |
| Conread position: | 304-845 |
| Cow position: | chr2:5874686-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 314-893 |
| Cow position: | chr2:5875180-5874601 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 236, 209 |
| Conread position: | 357-856 |
| Cow position: | chr2:86464977-86465474 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 274, 10 |
| Conread position: | 384-854 |
| Cow position: | chr2:78754166-78754634 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 146 |
| Conread position: | 433-893 |
| Cow position: | chr2:86464967-86465427 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 143, 132 |
| Conread position: | 471-849 |
| Cow position: | chr2:48689550-48689173 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 631-911 |
| Cow position: | chr2:82799424-82799705 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 639-889 |
| Cow position: | chr2:48689550-48689301 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 5 |
Show alignments to all cow chromosomes.