Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070010.5

Conread position: 145-655
Cow position:
Alignm length: 513
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 39

Conread position: 175-520
Cow position:
Alignm length: 351
Alignm identity: 229
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 19, 8

Conread position: 202-906
Cow position:
Alignm length: 709
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 71

Conread position: 204-894
Cow position:
Alignm length: 698
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 58

Conread position: 206-586
Cow position:
Alignm length: 384
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 0

Conread position: 206-656
Cow position:
Alignm length: 456
Alignm identity: 291
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 73, 56

Conread position: 206-741
Cow position:
Alignm length: 544
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 56

Conread position: 207-814
Cow position:
Alignm length: 609
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 65

Conread position: 208-567
Cow position:
Alignm length: 360
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 208-655
Cow position:
Alignm length: 448
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 221-735
Cow position:
Alignm length: 515
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 222-893
Cow position:
Alignm length: 677
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 310

Conread position: 223-893
Cow position:
Alignm length: 671
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 223-893
Cow position:
Alignm length: 672
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 472

Conread position: 224-818
Cow position:
Alignm length: 598
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 61

Conread position: 224-893
Cow position:
Alignm length: 670
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-893
Cow position:
Alignm length: 670
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-896
Cow position:
Alignm length: 676
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 54

Conread position: 224-917
Cow position:
Alignm length: 696
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 465

Conread position: 225-906
Cow position:
Alignm length: 685
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 33

Conread position: 227-844
Cow position:
Alignm length: 624
Alignm identity: 367
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 212, 234

Conread position: 228-486
Cow position:
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 49

Conread position: 228-565
Cow position:
Alignm length: 339
Alignm identity: 219
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 132, 127

Conread position: 228-572
Cow position:
Alignm length: 346
Alignm identity: 223
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 47, 37

Conread position: 228-641
Cow position:
Alignm length: 415
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 399

Conread position: 228-854
Cow position:
Alignm length: 634
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 34

Conread position: 228-855
Cow position:
Alignm length: 629
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 307

Conread position: 228-885
Cow position:
Alignm length: 658
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 228-889
Cow position:
Alignm length: 662
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-489
Cow position:
Alignm length: 262
Alignm identity: 172
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 33

Conread position: 229-490
Cow position:
Alignm length: 262
Alignm identity: 176
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 229-742
Cow position:
Alignm length: 514
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-813
Cow position:
Alignm length: 588
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 127

Conread position: 229-855
Cow position:
Alignm length: 627
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-855
Cow position:
Alignm length: 628
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 35

Conread position: 229-857
Cow position:
Alignm length: 630
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 48

Conread position: 229-889
Cow position:
Alignm length: 679
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 23

Conread position: 229-893
Cow position:
Alignm length: 666
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 33

Conread position: 229-893
Cow position:
Alignm length: 665
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-893
Cow position:
Alignm length: 667
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 306

Conread position: 229-894
Cow position:
Alignm length: 667
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 448

Conread position: 229-894
Cow position:
Alignm length: 666
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-894
Cow position:
Alignm length: 667
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 33

Conread position: 229-894
Cow position:
Alignm length: 666
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-898
Cow position:
Alignm length: 673
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 33

Conread position: 229-905
Cow position:
Alignm length: 679
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 32

Conread position: 230-742
Cow position:
Alignm length: 514
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 231-819
Cow position:
Alignm length: 592
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 376

Conread position: 231-894
Cow position:
Alignm length: 665
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 128

Conread position: 237-656
Cow position:
Alignm length: 424
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 41

Conread position: 237-893
Cow position:
Alignm length: 664
Alignm identity: 393
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 95, 101

Conread position: 237-894
Cow position:
Alignm length: 661
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 25

Conread position: 237-905
Cow position:
Alignm length: 670
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 188

Conread position: 238-741
Cow position:
Alignm length: 507
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 117

Conread position: 238-821
Cow position:
Alignm length: 586
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 116

Conread position: 238-821
Cow position:
Alignm length: 584
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 238-822
Cow position:
Alignm length: 586
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 293

Conread position: 238-850
Cow position:
Alignm length: 614
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 52

Conread position: 238-855
Cow position:
Alignm length: 619
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 291

Conread position: 238-855
Cow position:
Alignm length: 627
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 24

Conread position: 238-893
Cow position:
Alignm length: 660
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 23

Conread position: 238-893
Cow position:
Alignm length: 658
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 238-893
Cow position:
Alignm length: 659
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 238-894
Cow position:
Alignm length: 657
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 238-905
Cow position:
Alignm length: 669
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 187

Conread position: 239-855
Cow position:
Alignm length: 621
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 123

Conread position: 239-917
Cow position:
Alignm length: 680
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 382

Conread position: 240-894
Cow position:
Alignm length: 673
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 32

Conread position: 241-905
Cow position:
Alignm length: 667
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 69

Conread position: 242-832
Cow position:
Alignm length: 594
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 132

Conread position: 242-854
Cow position:
Alignm length: 619
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 244-821
Cow position:
Alignm length: 578
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 251-849
Cow position:
Alignm length: 599
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 252-855
Cow position:
Alignm length: 613
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 188

Conread position: 274-894
Cow position:
Alignm length: 638
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 0

Conread position: 277-866
Cow position:
Alignm length: 594
Alignm identity: 359
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 78, 84

Conread position: 283-889
Cow position:
Alignm length: 607
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 283-894
Cow position:
Alignm length: 612
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 283-906
Cow position:
Alignm length: 624
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 284-720
Cow position:
Alignm length: 440
Alignm identity: 278
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 69, 78

Conread position: 290-855
Cow position:
Alignm length: 570
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 86

Conread position: 291-855
Cow position:
Alignm length: 566
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 256

Conread position: 291-886
Cow position:
Alignm length: 599
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 291-886
Cow position:
Alignm length: 596
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 291-886
Cow position:
Alignm length: 597
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 38

Conread position: 292-670
Cow position:
Alignm length: 380
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 147

Conread position: 292-855
Cow position:
Alignm length: 568
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 69

Conread position: 292-893
Cow position:
Alignm length: 603
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 243

Conread position: 297-691
Cow position:
Alignm length: 398
Alignm identity: 261
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 79, 63

Conread position: 297-851
Cow position:
Alignm length: 561
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 220

Conread position: 297-855
Cow position:
Alignm length: 562
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 233

Conread position: 298-869
Cow position:
Alignm length: 578
Alignm identity: 349
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 12, 81

Conread position: 299-686
Cow position:
Alignm length: 390
Alignm identity: 236
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 223, 233

Conread position: 301-896
Cow position:
Alignm length: 598
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 246

Conread position: 306-855
Cow position:
Alignm length: 551
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 137

Conread position: 312-805
Cow position:
Alignm length: 497
Alignm identity: 314
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 296, 184

Conread position: 321-820
Cow position:
Alignm length: 502
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 118

Conread position: 321-855
Cow position:
Alignm length: 536
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 374

Conread position: 325-851
Cow position:
Alignm length: 530
Alignm identity: 317
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 106, 120

Conread position: 330-894
Cow position:
Alignm length: 567
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 108

Conread position: 339-855
Cow position:
Alignm length: 522
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 278

Conread position: 360-893
Cow position:
Alignm length: 534
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 360-893
Cow position:
Alignm length: 534
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 377-853
Cow position:
Alignm length: 477
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 386-656
Cow position:
Alignm length: 273
Alignm identity: 174
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 54, 75

Conread position: 390-854
Cow position:
Alignm length: 466
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 140

Conread position: 398-917
Cow position:
Alignm length: 525
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 51

Conread position: 405-889
Cow position:
Alignm length: 486
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 125

Conread position: 447-854
Cow position:
Alignm length: 410
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 114

Conread position: 454-894
Cow position:
Alignm length: 445
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 24

Conread position: 457-905
Cow position:
Alignm length: 449
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 0

Conread position: 459-855
Cow position:
Alignm length: 400
Alignm identity: 244
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 64, 71

Conread position: 468-784
Cow position:
Alignm length: 317
Alignm identity: 205
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 489-885
Cow position:
Alignm length: 398
Alignm identity: 253
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 34, 40

Conread position: 489-899
Cow position:
Alignm length: 418
Alignm identity: 258
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 130

Conread position: 491-894
Cow position:
Alignm length: 407
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 491-894
Cow position:
Alignm length: 406
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 537-883
Cow position:
Alignm length: 352
Alignm identity: 236
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 29, 16

Conread position: 566-905
Cow position:
Alignm length: 340
Alignm identity: 230
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 81, 0

Conread position: 573-893
Cow position:
Alignm length: 322
Alignm identity: 206
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 116, 122

Conread position: 586-893
Cow position:
Alignm length: 309
Alignm identity: 190
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 103

Conread position: 627-893
Cow position:
Alignm length: 267
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.