Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 45-1182 |
| Cow position: | chr23:24547519-24546378 (view UCSC Genome Browser custom track) |
| Alignm length: | 1152 |
| Alignm identity: | 1030 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 945 |
| Conread position: | 149-821 |
| Cow position: | chr23:24536124-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-642 |
| Cow position: | chr23:25724195-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 54 |
| Conread position: | 164-893 |
| Cow position: | chr23:25625882-25626608 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 165-569 |
| Cow position: | chr23:24626329-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 169-823 |
| Cow position: | chr23:25660092-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 175-637 |
| Cow position: | chr23:24639667-24640128 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 199-893 |
| Cow position: | chr23:24560919-24560225 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 172 |
| Conread position: | 200-893 |
| Cow position: | chr23:24639188-24639881 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 201 |
| Conread position: | 203-566 |
| Cow position: | chr23:24654094-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 208-690 |
| Cow position: | chr23:24535897-24535414 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 337 |
| Conread position: | 224-673 |
| Cow position: | chr23:24639632-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 224-755 |
| Cow position: | chr23:24639548-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 224-893 |
| Cow position: | chr23:24522320-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 314 |
| Conread position: | 224-893 |
| Cow position: | chr23:25626026-25626692 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 236 |
| Conread position: | 224-902 |
| Cow position: | chr23:25626278-25626953 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 227-783 |
| Cow position: | chr23:25626533-25627087 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 51 |
| Conread position: | 227-822 |
| Cow position: | chr23:24560723-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-893 |
| Cow position: | chr23:24522485-24521817 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 476 |
| Conread position: | 228-642 |
| Cow position: | chr23:25698488-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 131 |
| Conread position: | 228-809 |
| Cow position: | chr23:25698656-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 228-824 |
| Cow position: | chr23:24639468-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 228-886 |
| Cow position: | chr23:25626366-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 228-893 |
| Cow position: | chr23:24639300-24639965 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 89 |
| Conread position: | 229-855 |
| Cow position: | chr23:24522814-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 27 |
| Conread position: | 229-893 |
| Cow position: | chr23:24560805-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-650 |
| Cow position: | chr23:24654036-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 238-559 |
| Cow position: | chr23:24521968-24521652 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 117, 124 |
| Conread position: | 238-629 |
| Cow position: | chr23:24522558-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-640 |
| Cow position: | chr23:24560460-24560058 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 238-849 |
| Cow position: | chr23:25626460-25627070 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 65 |
| Conread position: | 239-671 |
| Cow position: | chr23:24626319-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 239-797 |
| Cow position: | chr23:24522722-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 239-906 |
| Cow position: | chr23:24639395-24640062 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 261-756 |
| Cow position: | chr23:24626257-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 261-886 |
| Cow position: | chr23:25698706-25698082 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 303-893 |
| Cow position: | chr23:24536054-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-885 |
| Cow position: | chr23:24522576-24521980 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 156 |
| Conread position: | 306-855 |
| Cow position: | chr23:25660145-25660694 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 118 |
| Conread position: | 310-917 |
| Cow position: | chr23:25625946-25626551 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 313-886 |
| Cow position: | chr23:24522814-24522246 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 318-642 |
| Cow position: | chr23:24521972-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 125 |
| Conread position: | 321-734 |
| Cow position: | chr23:24654042-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 343 |
| Conread position: | 323-725 |
| Cow position: | chr23:25724116-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 296 |
| Conread position: | 362-840 |
| Cow position: | chr23:24626274-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 388-893 |
| Cow position: | chr23:24522823-24522323 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 390-889 |
| Cow position: | chr23:25660145-25660644 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 405-818 |
| Cow position: | chr23:24654042-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 375 |
| Conread position: | 411-809 |
| Cow position: | chr23:25724112-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 412-917 |
| Cow position: | chr23:24639232-24639737 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 449-709 |
| Cow position: | chr23:24542372-24542116 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 449-893 |
| Cow position: | chr23:24626277-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 459-893 |
| Cow position: | chr23:25698677-25698243 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 489-843 |
| Cow position: | chr23:24654042-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-899 |
| Cow position: | chr23:25724105-25723708 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 526-772 |
| Cow position: | chr23:24542379-24542137 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 530-889 |
| Cow position: | chr23:24626274-24626633 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 560-917 |
| Cow position: | chr23:25660147-25660504 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 239 |
| Conread position: | 565-905 |
| Cow position: | chr23:24522814-24522479 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 574-894 |
| Cow position: | chr23:24654043-24654363 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 584-917 |
| Cow position: | chr23:25724107-25723774 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 609-898 |
| Cow position: | chr23:24626269-24626558 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 639-917 |
| Cow position: | chr23:24560897-24560621 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 644-889 |
| Cow position: | chr23:25724131-25723886 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.