Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 148-893 |
| Cow position: | chr24:17036376-17035630 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 168-855 |
| Cow position: | chr24:17078238-17077551 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 199-587 |
| Cow position: | chr24:17013137-17013521 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 205-725 |
| Cow position: | chr24:17070519-17071039 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 483 |
| Conread position: | 207-493 |
| Cow position: | chr24:17070773-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 224-562 |
| Cow position: | chr24:17077846-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-893 |
| Cow position: | chr24:17035711-17035042 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-819 |
| Cow position: | chr24:17078092-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 228-835 |
| Cow position: | chr24:17035539-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 592, 0 |
| Conread position: | 228-893 |
| Cow position: | chr24:17035959-17035294 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-893 |
| Cow position: | chr24:17036043-17035378 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 228-894 |
| Cow position: | chr24:17035623-17034957 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 548 |
| Conread position: | 228-894 |
| Cow position: | chr24:17035875-17035209 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 228-897 |
| Cow position: | chr24:17078262-17077593 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-664 |
| Cow position: | chr24:17070627-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-893 |
| Cow position: | chr24:17036126-17035462 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 100 |
| Conread position: | 229-893 |
| Cow position: | chr24:17036546-17035882 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 355 |
| Conread position: | 229-894 |
| Cow position: | chr24:17036378-17035713 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 201 |
| Conread position: | 231-881 |
| Cow position: | chr24:17036625-17035978 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 72 |
| Conread position: | 238-823 |
| Cow position: | chr24:17070468-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 238-893 |
| Cow position: | chr24:17036201-17035546 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 450 |
| Conread position: | 250-443 |
| Cow position: | chr24:16986451-16986644 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-905 |
| Cow position: | chr24:17035760-17035114 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-884 |
| Cow position: | chr24:17036418-17035807 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 241 |
| Conread position: | 291-901 |
| Cow position: | chr24:17070437-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-653 |
| Cow position: | chr24:17013148-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-855 |
| Cow position: | chr24:17070362-17070917 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 384-756 |
| Cow position: | chr24:17013152-17013522 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 412-625 |
| Cow position: | chr24:16986445-16986658 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 412-893 |
| Cow position: | chr24:17070390-17070871 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 459-894 |
| Cow position: | chr24:17078283-17077848 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 464-823 |
| Cow position: | chr24:17013147-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-894 |
| Cow position: | chr24:17070362-17070788 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 479-706 |
| Cow position: | chr24:16986428-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 496-894 |
| Cow position: | chr24:17036612-17036217 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 517-893 |
| Cow position: | chr24:17078393-17078017 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 548-942 |
| Cow position: | chr24:17013147-17013540 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 0 |
| Conread position: | 566-790 |
| Cow position: | chr24:16986431-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 133, 111 |
| Conread position: | 580-905 |
| Cow position: | chr24:17036612-17036290 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 647-866 |
| Cow position: | chr24:16986428-16986647 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 121, 113 |
Show alignments to all cow chromosomes.