Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070010.5

Conread position: 168-827
Cow position:
Alignm length: 666
Alignm identity: 399
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 30, 17

Conread position: 172-826
Cow position:
Alignm length: 662
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 15

Conread position: 205-885
Cow position:
Alignm length: 686
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 10

Conread position: 205-893
Cow position:
Alignm length: 699
Alignm identity: 411
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 227, 220

Conread position: 207-558
Cow position:
Alignm length: 353
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 292

Conread position: 207-893
Cow position:
Alignm length: 687
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 535, 0

Conread position: 208-917
Cow position:
Alignm length: 720
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 47

Conread position: 210-855
Cow position:
Alignm length: 647
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 9

Conread position: 217-653
Cow position:
Alignm length: 437
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 220-893
Cow position:
Alignm length: 675
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 550, 541

Conread position: 222-651
Cow position:
Alignm length: 434
Alignm identity: 280
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 53, 40

Conread position: 224-686
Cow position:
Alignm length: 463
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-739
Cow position:
Alignm length: 520
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 295

Conread position: 224-848
Cow position:
Alignm length: 627
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 55

Conread position: 224-851
Cow position:
Alignm length: 628
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 586, 0

Conread position: 224-855
Cow position:
Alignm length: 634
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 48

Conread position: 224-855
Cow position:
Alignm length: 632
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-881
Cow position:
Alignm length: 658
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-893
Cow position:
Alignm length: 672
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 138

Conread position: 224-894
Cow position:
Alignm length: 672
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 48

Conread position: 224-894
Cow position:
Alignm length: 673
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 49

Conread position: 224-917
Cow position:
Alignm length: 697
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 305

Conread position: 225-821
Cow position:
Alignm length: 597
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 225-848
Cow position:
Alignm length: 630
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 226-866
Cow position:
Alignm length: 643
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 145

Conread position: 226-893
Cow position:
Alignm length: 670
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 208

Conread position: 227-646
Cow position:
Alignm length: 424
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 227-683
Cow position:
Alignm length: 470
Alignm identity: 291
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 104, 147

Conread position: 227-905
Cow position:
Alignm length: 681
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 128

Conread position: 228-406
Cow position:
Alignm length: 180
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 51, 34

Conread position: 228-605
Cow position:
Alignm length: 378
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 228-738
Cow position:
Alignm length: 512
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 502, 476

Conread position: 228-819
Cow position:
Alignm length: 594
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 164

Conread position: 228-855
Cow position:
Alignm length: 629
Alignm identity: 386
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 202, 208

Conread position: 228-855
Cow position:
Alignm length: 628
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 228-898
Cow position:
Alignm length: 679
Alignm identity: 400
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 475, 131

Conread position: 228-905
Cow position:
Alignm length: 678
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 669, 0

Conread position: 229-490
Cow position:
Alignm length: 262
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 229-570
Cow position:
Alignm length: 343
Alignm identity: 207
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 285, 300

Conread position: 229-709
Cow position:
Alignm length: 484
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 208

Conread position: 229-856
Cow position:
Alignm length: 631
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 127

Conread position: 238-414
Cow position:
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 24

Conread position: 238-651
Cow position:
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 238-828
Cow position:
Alignm length: 598
Alignm identity: 352
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 192, 196

Conread position: 238-840
Cow position:
Alignm length: 605
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 238-872
Cow position:
Alignm length: 639
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 196

Conread position: 238-881
Cow position:
Alignm length: 648
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 134

Conread position: 238-889
Cow position:
Alignm length: 660
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 353

Conread position: 238-893
Cow position:
Alignm length: 657
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 47

Conread position: 238-894
Cow position:
Alignm length: 660
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 292

Conread position: 238-894
Cow position:
Alignm length: 658
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 40

Conread position: 240-687
Cow position:
Alignm length: 450
Alignm identity: 277
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 211, 11

Conread position: 241-688
Cow position:
Alignm length: 450
Alignm identity: 281
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 189, 193

Conread position: 241-805
Cow position:
Alignm length: 566
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 551, 556

Conread position: 241-894
Cow position:
Alignm length: 654
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 242-893
Cow position:
Alignm length: 654
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 36

Conread position: 244-833
Cow position:
Alignm length: 593
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 282

Conread position: 244-855
Cow position:
Alignm length: 617
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 204

Conread position: 244-885
Cow position:
Alignm length: 644
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 526

Conread position: 248-751
Cow position:
Alignm length: 505
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 182

Conread position: 250-734
Cow position:
Alignm length: 485
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 253-893
Cow position:
Alignm length: 651
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 108

Conread position: 271-854
Cow position:
Alignm length: 590
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 87

Conread position: 271-905
Cow position:
Alignm length: 640
Alignm identity: 390
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 61

Conread position: 271-914
Cow position:
Alignm length: 648
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 247

Conread position: 273-893
Cow position:
Alignm length: 625
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 89

Conread position: 274-883
Cow position:
Alignm length: 615
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 160

Conread position: 274-884
Cow position:
Alignm length: 612
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 39

Conread position: 277-889
Cow position:
Alignm length: 617
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 18

Conread position: 282-887
Cow position:
Alignm length: 606
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 284-850
Cow position:
Alignm length: 569
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 110

Conread position: 291-772
Cow position:
Alignm length: 497
Alignm identity: 313
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 119, 168

Conread position: 292-893
Cow position:
Alignm length: 608
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 147

Conread position: 296-832
Cow position:
Alignm length: 537
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 303-799
Cow position:
Alignm length: 499
Alignm identity: 301
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 25, 5

Conread position: 306-905
Cow position:
Alignm length: 603
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 298

Conread position: 309-848
Cow position:
Alignm length: 543
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 143

Conread position: 309-893
Cow position:
Alignm length: 586
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 569, 559

Conread position: 310-856
Cow position:
Alignm length: 548
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 219

Conread position: 310-893
Cow position:
Alignm length: 585
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 192

Conread position: 312-641
Cow position:
Alignm length: 330
Alignm identity: 210
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 312-744
Cow position:
Alignm length: 436
Alignm identity: 281
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 40, 48

Conread position: 313-885
Cow position:
Alignm length: 577
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 313-893
Cow position:
Alignm length: 582
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 221

Conread position: 313-893
Cow position:
Alignm length: 603
Alignm identity: 380
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 206, 292

Conread position: 314-855
Cow position:
Alignm length: 545
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 314-885
Cow position:
Alignm length: 576
Alignm identity: 348
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 120, 111

Conread position: 314-893
Cow position:
Alignm length: 587
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 126

Conread position: 315-848
Cow position:
Alignm length: 534
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 316-809
Cow position:
Alignm length: 496
Alignm identity: 309
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 292, 301

Conread position: 327-653
Cow position:
Alignm length: 329
Alignm identity: 201
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 103, 107

Conread position: 336-893
Cow position:
Alignm length: 559
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 13

Conread position: 336-901
Cow position:
Alignm length: 568
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 13

Conread position: 343-889
Cow position:
Alignm length: 547
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 361-861
Cow position:
Alignm length: 515
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 99

Conread position: 361-892
Cow position:
Alignm length: 534
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 11

Conread position: 366-893
Cow position:
Alignm length: 531
Alignm identity: 321
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 159, 21

Conread position: 375-889
Cow position:
Alignm length: 517
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 95

Conread position: 378-601
Cow position:
Alignm length: 224
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 388-894
Cow position:
Alignm length: 512
Alignm identity: 330
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 23

Conread position: 394-894
Cow position:
Alignm length: 504
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 166

Conread position: 397-726
Cow position:
Alignm length: 331
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 186, 192

Conread position: 397-894
Cow position:
Alignm length: 500
Alignm identity: 303
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 39, 53

Conread position: 397-897
Cow position:
Alignm length: 503
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 37

Conread position: 399-824
Cow position:
Alignm length: 427
Alignm identity: 254
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 308, 301

Conread position: 400-906
Cow position:
Alignm length: 509
Alignm identity: 311
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 9, 290

Conread position: 403-809
Cow position:
Alignm length: 409
Alignm identity: 264
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 180, 186

Conread position: 416-893
Cow position:
Alignm length: 480
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 115

Conread position: 417-893
Cow position:
Alignm length: 477
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 428-917
Cow position:
Alignm length: 491
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 5

Conread position: 446-905
Cow position:
Alignm length: 461
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 35

Conread position: 448-685
Cow position:
Alignm length: 238
Alignm identity: 152
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 448-894
Cow position:
Alignm length: 453
Alignm identity: 284
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 85, 30

Conread position: 449-906
Cow position:
Alignm length: 461
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 23

Conread position: 462-886
Cow position:
Alignm length: 426
Alignm identity: 255
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 67, 55

Conread position: 471-849
Cow position:
Alignm length: 381
Alignm identity: 245
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 26, 7

Conread position: 477-901
Cow position:
Alignm length: 425
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 480-917
Cow position:
Alignm length: 441
Alignm identity: 279
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 118, 130

Conread position: 481-894
Cow position:
Alignm length: 415
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 78

Conread position: 482-893
Cow position:
Alignm length: 414
Alignm identity: 243
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 170, 177

Conread position: 494-851
Cow position:
Alignm length: 360
Alignm identity: 230
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 205, 9

Conread position: 496-822
Cow position:
Alignm length: 329
Alignm identity: 201
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 18

Conread position: 502-893
Cow position:
Alignm length: 394
Alignm identity: 257
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 9, 16

Conread position: 517-757
Cow position:
Alignm length: 242
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 525-893
Cow position:
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 539-803
Cow position:
Alignm length: 267
Alignm identity: 176
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 67, 71

Conread position: 560-833
Cow position:
Alignm length: 274
Alignm identity: 174
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 562-917
Cow position:
Alignm length: 357
Alignm identity: 224
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 141, 132

Conread position: 565-855
Cow position:
Alignm length: 291
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 565-894
Cow position:
Alignm length: 331
Alignm identity: 217
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 118, 129

Conread position: 586-848
Cow position:
Alignm length: 264
Alignm identity: 167
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 184, 175

Conread position: 586-893
Cow position:
Alignm length: 308
Alignm identity: 201
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 622-917
Cow position:
Alignm length: 296
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 632-849
Cow position:
Alignm length: 218
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 639-889
Cow position:
Alignm length: 252
Alignm identity: 163
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 5

Conread position: 650-873
Cow position:
Alignm length: 225
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 39

Conread position: 702-905
Cow position:
Alignm length: 205
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 89

Show alignments to all cow chromosomes.