Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 164-750 |
| Cow position: | chr28:11333783-11333196 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 205-893 |
| Cow position: | chr28:7757980-7758652 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 207-604 |
| Cow position: | chr28:7758470-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 134, 152 |
| Conread position: | 210-656 |
| Cow position: | chr28:33210211-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 15 |
| Conread position: | 219-844 |
| Cow position: | chr28:11333979-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 461 |
| Conread position: | 220-778 |
| Cow position: | chr28:34673343-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 9, 283 |
| Conread position: | 223-809 |
| Cow position: | chr28:34695990-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 151 |
| Conread position: | 224-500 |
| Cow position: | chr28:7810670-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-558 |
| Cow position: | chr28:34696243-34696577 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-604 |
| Cow position: | chr28:9253266-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 224-611 |
| Cow position: | chr28:34673518-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 117, 125 |
| Conread position: | 224-656 |
| Cow position: | chr28:9299300-9299727 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 224-777 |
| Cow position: | chr28:9290167-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 224-809 |
| Cow position: | chr28:7757747-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 224-822 |
| Cow position: | chr28:9253014-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-849 |
| Cow position: | chr28:7758167-7758776 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 224-885 |
| Cow position: | chr28:7758083-7758728 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 224-894 |
| Cow position: | chr28:7757495-7758165 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-894 |
| Cow position: | chr28:7757579-7758249 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 565 |
| Conread position: | 225-653 |
| Cow position: | chr28:7758404-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 218 |
| Conread position: | 225-855 |
| Cow position: | chr28:7757916-7758530 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 225-889 |
| Cow position: | chr28:7757412-7758076 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 225-893 |
| Cow position: | chr28:9252600-9253263 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 107 |
| Conread position: | 226-885 |
| Cow position: | chr28:34695909-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 292 |
| Conread position: | 229-813 |
| Cow position: | chr28:11334053-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 372 |
| Conread position: | 229-885 |
| Cow position: | chr28:11334137-11333481 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 130 |
| Conread position: | 229-893 |
| Cow position: | chr28:7757668-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 301 |
| Conread position: | 229-894 |
| Cow position: | chr28:7757334-7757997 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 231-893 |
| Cow position: | chr28:9252937-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 234-668 |
| Cow position: | chr28:7810512-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 277 |
| Conread position: | 238-686 |
| Cow position: | chr28:11333624-11333175 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 238-834 |
| Cow position: | chr28:7810357-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 238-895 |
| Cow position: | chr28:9299076-9299717 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 110 |
| Conread position: | 239-791 |
| Cow position: | chr28:7758334-7758886 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 290 |
| Conread position: | 241-893 |
| Cow position: | chr28:34695840-34696492 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 244-893 |
| Cow position: | chr28:11334206-11333557 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 207 |
| Conread position: | 249-893 |
| Cow position: | chr28:7810284-7810919 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 250-497 |
| Cow position: | chr28:34696353-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 261-811 |
| Cow position: | chr28:34679611-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 284-857 |
| Cow position: | chr28:7810244-7810799 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 41 |
| Conread position: | 284-917 |
| Cow position: | chr28:9289727-9290352 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 386 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 329, 160 |
| Conread position: | 291-893 |
| Cow position: | chr28:9289818-9290411 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 68 |
| Conread position: | 292-855 |
| Cow position: | chr28:9290151-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 293-873 |
| Cow position: | chr28:34695724-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 86 |
| Conread position: | 294-893 |
| Cow position: | chr28:9289982-9290578 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 164 |
| Conread position: | 297-896 |
| Cow position: | chr28:9298969-9299552 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 25 |
| Conread position: | 304-849 |
| Cow position: | chr28:9298643-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 309-854 |
| Cow position: | chr28:9299217-9299757 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 353 |
| Conread position: | 311-849 |
| Cow position: | chr28:34673353-34673891 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 334 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 282, 290 |
| Conread position: | 312-822 |
| Cow position: | chr28:7758323-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 299 |
| Conread position: | 349-893 |
| Cow position: | chr28:9289708-9290246 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 340 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 377-885 |
| Cow position: | chr28:34695724-34696232 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 396-797 |
| Cow position: | chr28:33210227-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 38 |
| Conread position: | 416-894 |
| Cow position: | chr28:7810283-7810752 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 459-905 |
| Cow position: | chr28:7810251-7810679 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 459-905 |
| Cow position: | chr28:9252747-9253191 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 197, 144 |
| Conread position: | 460-855 |
| Cow position: | chr28:34679579-34679183 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 234, 33 |
| Conread position: | 477-887 |
| Cow position: | chr28:33210223-33210635 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 561-962 |
| Cow position: | chr28:34679562-34679162 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 564-889 |
| Cow position: | chr28:33210227-33210552 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 204, 196 |
| Conread position: | 574-894 |
| Cow position: | chr28:11334212-11333892 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 114 |
Show alignments to all cow chromosomes.