Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 165-521 |
| Cow position: | chr3:62743112-62743468 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 208-905 |
| Cow position: | chr3:62742674-62743348 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 76 |
| Conread position: | 220-894 |
| Cow position: | chr3:68026915-68027589 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-906 |
| Cow position: | chr3:62722331-62721648 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 222-854 |
| Cow position: | chr3:62742355-62742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 225-886 |
| Cow position: | chr3:68045598-68046258 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 13 |
| Conread position: | 227-651 |
| Cow position: | chr3:62721991-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-650 |
| Cow position: | chr3:68045936-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 295 |
| Conread position: | 228-822 |
| Cow position: | chr3:62722158-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-889 |
| Cow position: | chr3:62742278-62742934 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 77 |
| Conread position: | 228-893 |
| Cow position: | chr3:68027091-68027756 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 554 |
| Conread position: | 228-894 |
| Cow position: | chr3:62742776-62743421 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 228-901 |
| Cow position: | chr3:62722242-62721569 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-904 |
| Cow position: | chr3:77351240-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 229-824 |
| Cow position: | chr3:62742446-62743032 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 197 |
| Conread position: | 238-776 |
| Cow position: | chr3:62742955-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 238-849 |
| Cow position: | chr3:62742870-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 242-905 |
| Cow position: | chr3:68027021-68027684 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 549 |
| Conread position: | 243-893 |
| Cow position: | chr3:68045699-68046349 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 445 |
| Conread position: | 244-687 |
| Cow position: | chr3:20194821-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 287-894 |
| Cow position: | chr3:62742253-62742854 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 292-854 |
| Cow position: | chr3:68045580-68046142 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 327 |
| Conread position: | 315-917 |
| Cow position: | chr3:62722323-62721721 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-889 |
| Cow position: | chr3:62742276-62742765 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 400-894 |
| Cow position: | chr3:68045604-68046098 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 303 |
| Conread position: | 452-894 |
| Cow position: | chr3:68045572-68046014 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 455-940 |
| Cow position: | chr3:77351182-77350705 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 78 |
| Conread position: | 567-905 |
| Cow position: | chr3:68027011-68027349 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 98, 9 |
| Conread position: | 592-905 |
| Cow position: | chr3:62722381-62722069 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 613-889 |
| Cow position: | chr3:68045565-68045841 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 620-893 |
| Cow position: | chr3:62742250-62742522 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 703-894 |
| Cow position: | chr3:16020409-16020218 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.