Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 168-889 |
| Cow position: | chr6:49340427-49341148 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 207-894 |
| Cow position: | chr6:49340634-49341321 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 218 |
| Conread position: | 224-682 |
| Cow position: | chr6:49396541-49396998 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 14 |
| Conread position: | 224-789 |
| Cow position: | chr6:49340903-49341466 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 0 |
| Conread position: | 224-833 |
| Cow position: | chr6:49396372-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 149 |
| Conread position: | 224-886 |
| Cow position: | chr6:49395788-49396446 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 226-889 |
| Cow position: | chr6:49340401-49341064 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 451 |
| Conread position: | 226-905 |
| Cow position: | chr6:49395960-49396633 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 228-764 |
| Cow position: | chr6:49396460-49396996 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 313 |
| Conread position: | 228-855 |
| Cow position: | chr6:49340823-49341449 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 617, 0 |
| Conread position: | 228-894 |
| Cow position: | chr6:49340571-49341237 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-873 |
| Cow position: | chr6:49396131-49396769 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 100 |
| Conread position: | 230-839 |
| Cow position: | chr6:49362268-49362853 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 200, 60 |
| Conread position: | 237-878 |
| Cow position: | chr6:49396301-49396941 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 238-833 |
| Cow position: | chr6:49428489-49429084 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 118 |
| Conread position: | 238-864 |
| Cow position: | chr6:49428657-49429283 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 238-911 |
| Cow position: | chr6:49361940-49362601 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 393 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 202, 223 |
| Conread position: | 240-620 |
| Cow position: | chr6:49429163-49429541 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 342, 0 |
| Conread position: | 242-905 |
| Cow position: | chr6:49340753-49341417 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 661, 0 |
| Conread position: | 244-893 |
| Cow position: | chr6:49428579-49429228 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 244-905 |
| Cow position: | chr6:49428831-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 133 |
| Conread position: | 250-885 |
| Cow position: | chr6:49428333-49428968 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 271-889 |
| Cow position: | chr6:49340362-49340980 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 417 |
| Conread position: | 291-705 |
| Cow position: | chr6:49429130-49429542 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 292-789 |
| Cow position: | chr6:49429047-49429542 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 292-872 |
| Cow position: | chr6:49396272-49396852 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 292-893 |
| Cow position: | chr6:49395693-49396285 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 241, 50 |
| Conread position: | 292-906 |
| Cow position: | chr6:49395942-49396550 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 302-872 |
| Cow position: | chr6:49428469-49429039 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 467, 459 |
| Conread position: | 304-832 |
| Cow position: | chr6:49428975-49429503 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 396 |
| Conread position: | 315-855 |
| Cow position: | chr6:49428230-49428770 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 119 |
| Conread position: | 381-917 |
| Cow position: | chr6:49340148-49340672 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 386-894 |
| Cow position: | chr6:49362328-49362824 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 132 |
| Conread position: | 465-906 |
| Cow position: | chr6:49340388-49340829 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 295 |
Show alignments to all cow chromosomes.