Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 154-894 |
| Cow position: | chr7:3179873-3180614 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 168-855 |
| Cow position: | chr7:8324924-8325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 94 |
| Conread position: | 168-856 |
| Cow position: | chr7:8324756-8325444 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 171-894 |
| Cow position: | chr7:1014299-1015016 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 203-851 |
| Cow position: | chr7:8243025-8243672 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 208-615 |
| Cow position: | chr7:42878625-42878217 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 351, 361 |
| Conread position: | 224-499 |
| Cow position: | chr7:1015186-1015460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 114, 108 |
| Conread position: | 224-518 |
| Cow position: | chr7:11600772-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 237, 217 |
| Conread position: | 224-781 |
| Cow position: | chr7:18390241-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-849 |
| Cow position: | chr7:8277423-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 137 |
| Conread position: | 224-855 |
| Cow position: | chr7:18390157-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 224-867 |
| Cow position: | chr7:18389989-18390632 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 224-893 |
| Cow position: | chr7:1014766-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 387 |
| Conread position: | 224-909 |
| Cow position: | chr7:1014268-1014948 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 382 |
| Conread position: | 225-784 |
| Cow position: | chr7:1438163-1438720 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 33 |
| Conread position: | 227-905 |
| Cow position: | chr7:1014683-1015363 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 307 |
| Conread position: | 228-708 |
| Cow position: | chr7:18390329-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 228-776 |
| Cow position: | chr7:11434817-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 54 |
| Conread position: | 228-854 |
| Cow position: | chr7:1014854-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 228-893 |
| Cow position: | chr7:1014104-1014763 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 122 |
| Conread position: | 228-893 |
| Cow position: | chr7:42879025-42878360 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-894 |
| Cow position: | chr7:3179780-3180446 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 228-894 |
| Cow position: | chr7:11601104-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 228-894 |
| Cow position: | chr7:11601271-11600606 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 228-905 |
| Cow position: | chr7:3180116-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 298 |
| Conread position: | 228-906 |
| Cow position: | chr7:3180032-3180710 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-918 |
| Cow position: | chr7:42878941-42878252 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 302 |
| Conread position: | 228-962 |
| Cow position: | chr7:3180200-3180936 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 460 |
| Conread position: | 229-811 |
| Cow position: | chr7:11601019-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 229-855 |
| Cow position: | chr7:42879108-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-916 |
| Cow position: | chr7:8325657-8326341 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 229-932 |
| Cow position: | chr7:8277764-8278467 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 230-854 |
| Cow position: | chr7:1439637-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 132 |
| Conread position: | 230-893 |
| Cow position: | chr7:42879191-42878528 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 300 |
| Conread position: | 238-855 |
| Cow position: | chr7:8277269-8277886 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 238-893 |
| Cow position: | chr7:3179706-3180361 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 450 |
| Conread position: | 238-905 |
| Cow position: | chr7:1439479-1440147 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 239-854 |
| Cow position: | chr7:11601177-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 241-804 |
| Cow position: | chr7:28846519-28847082 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 137, 130 |
| Conread position: | 252-894 |
| Cow position: | chr7:42879253-42878611 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-773 |
| Cow position: | chr7:28846447-28846967 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 274-829 |
| Cow position: | chr7:12293309-12293864 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 178, 174 |
| Conread position: | 282-905 |
| Cow position: | chr7:1014656-1015279 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 284-894 |
| Cow position: | chr7:42879305-42878695 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 287-905 |
| Cow position: | chr7:3179923-3180542 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 401 |
| Conread position: | 290-881 |
| Cow position: | chr7:8325550-8326141 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 291-686 |
| Cow position: | chr7:8243700-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 147, 160 |
| Conread position: | 291-851 |
| Cow position: | chr7:8277742-8278302 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 291-854 |
| Cow position: | chr7:8277994-8278555 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 347 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 169 |
| Conread position: | 291-855 |
| Cow position: | chr7:8242861-8243424 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 291-855 |
| Cow position: | chr7:8277658-8278222 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 291-855 |
| Cow position: | chr7:8325383-8325947 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 233 |
| Conread position: | 291-858 |
| Cow position: | chr7:8277574-8278141 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 65 |
| Conread position: | 291-893 |
| Cow position: | chr7:3179675-3180277 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-855 |
| Cow position: | chr7:8243875-8244414 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 163, 120 |
| Conread position: | 298-889 |
| Cow position: | chr7:18390147-18390738 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 304-854 |
| Cow position: | chr7:8243545-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 304-894 |
| Cow position: | chr7:42879369-42878779 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 305-855 |
| Cow position: | chr7:11434824-11434281 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 56 |
| Conread position: | 306-855 |
| Cow position: | chr7:8243379-8243928 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 309-855 |
| Cow position: | chr7:8324729-8325275 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 315-893 |
| Cow position: | chr7:1438085-1438661 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 341 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 205, 110 |
| Conread position: | 318-855 |
| Cow position: | chr7:8242804-8243341 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 323-872 |
| Cow position: | chr7:28846433-28846982 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 129, 125 |
| Conread position: | 347-889 |
| Cow position: | chr7:1439420-1439963 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 168 |
| Conread position: | 348-854 |
| Cow position: | chr7:1438200-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-901 |
| Cow position: | chr7:1014084-1014609 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 142 |
| Conread position: | 376-905 |
| Cow position: | chr7:11601208-11600679 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 388-872 |
| Cow position: | chr7:12293339-12293823 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 388-917 |
| Cow position: | chr7:42879369-42878840 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-889 |
| Cow position: | chr7:18389995-18390486 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 127 |
| Conread position: | 399-854 |
| Cow position: | chr7:8324735-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 125 |
| Conread position: | 417-893 |
| Cow position: | chr7:42879424-42878948 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 450-894 |
| Cow position: | chr7:3179750-3180194 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 455-894 |
| Cow position: | chr7:1014079-1014518 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 459-917 |
| Cow position: | chr7:11601209-11600751 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-849 |
| Cow position: | chr7:8277255-8277628 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 476-894 |
| Cow position: | chr7:8324728-8325146 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 482-893 |
| Cow position: | chr7:18389995-18390406 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 219, 206 |
| Conread position: | 484-905 |
| Cow position: | chr7:42879442-42879020 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 570-906 |
| Cow position: | chr7:18389999-18390335 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 130 |
| Conread position: | 573-917 |
| Cow position: | chr7:3179705-3180049 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 625-864 |
| Cow position: | chr7:8277234-8277475 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 625-894 |
| Cow position: | chr7:3179673-3179942 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 646-906 |
| Cow position: | chr7:8324730-8324987 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 43 |
Show alignments to all cow chromosomes.