Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 145-545 |
| Cow position: | chr8:45201605-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 166-889 |
| Cow position: | chr8:45201123-45201846 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 175-894 |
| Cow position: | chr8:45201048-45201767 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 203-856 |
| Cow position: | chr8:55580798-55581449 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 207-893 |
| Cow position: | chr8:46816107-46816793 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 208-850 |
| Cow position: | chr8:46816696-46817338 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 265 |
| Conread position: | 208-894 |
| Cow position: | chr8:46816192-46816878 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 322 |
| Conread position: | 221-894 |
| Cow position: | chr8:46815953-46816626 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 224-550 |
| Cow position: | chr8:46817048-46817374 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 292, 305 |
| Conread position: | 224-570 |
| Cow position: | chr8:55581405-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 54 |
| Conread position: | 224-844 |
| Cow position: | chr8:48406879-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 224-849 |
| Cow position: | chr8:45201349-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-888 |
| Cow position: | chr8:45201265-45201929 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-894 |
| Cow position: | chr8:48407299-48406629 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 224-896 |
| Cow position: | chr8:48406963-48406291 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 224-917 |
| Cow position: | chr8:48407635-48406942 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 294 |
| Conread position: | 225-900 |
| Cow position: | chr8:46816629-46817304 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 226-889 |
| Cow position: | chr8:45201015-45201678 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 228-639 |
| Cow position: | chr8:46816968-46817378 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 228-762 |
| Cow position: | chr8:55581241-55581777 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 0 |
| Conread position: | 228-818 |
| Cow position: | chr8:55581157-55581747 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 210 |
| Conread position: | 228-821 |
| Cow position: | chr8:48407379-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 461 |
| Conread position: | 228-854 |
| Cow position: | chr8:46816548-46817174 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 228-894 |
| Cow position: | chr8:46816464-46817130 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 314 |
| Conread position: | 229-641 |
| Cow position: | chr8:48406622-48406201 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 295, 306 |
| Conread position: | 229-686 |
| Cow position: | chr8:46816885-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 229-855 |
| Cow position: | chr8:55581074-55581700 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-894 |
| Cow position: | chr8:46816381-46817046 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 301 |
| Conread position: | 229-906 |
| Cow position: | chr8:48407462-48406785 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 289 |
| Conread position: | 241-894 |
| Cow position: | chr8:45200778-45201431 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 242-893 |
| Cow position: | chr8:48407533-48406882 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 192 |
| Conread position: | 243-855 |
| Cow position: | chr8:46816311-46816923 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 531, 550 |
| Conread position: | 244-884 |
| Cow position: | chr8:55580921-55581561 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 436 |
| Conread position: | 244-889 |
| Cow position: | chr8:45200949-45201594 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 244-917 |
| Cow position: | chr8:48407027-48406354 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 288 |
| Conread position: | 246-726 |
| Cow position: | chr8:6958063-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 315, 276 |
| Conread position: | 249-943 |
| Cow position: | chr8:55581010-55581705 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 630, 619 |
| Conread position: | 292-894 |
| Cow position: | chr8:46816108-46816710 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-893 |
| Cow position: | chr8:55580736-55581318 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 315-893 |
| Cow position: | chr8:45200936-45201514 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-905 |
| Cow position: | chr8:55580737-55581247 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 418-894 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 350, 270 |
| Conread position: | 454-893 |
| Cow position: | chr8:48407657-48407218 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 502-828 |
| Cow position: | chr8:6958059-6957734 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 270, 284 |
| Conread position: | 586-886 |
| Cow position: | chr8:6958059-6957760 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 621-893 |
| Cow position: | chr8:48407658-48407386 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 670-894 |
| Cow position: | chr8:6958059-6957835 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.