Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070010.5 |
| Conread position: | 171-854 |
| Cow position: | chrX:12627381-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 420 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 269, 120 |
| Conread position: | 171-888 |
| Cow position: | chrX:25325141-25324424 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 195-905 |
| Cow position: | chrX:25325201-25324490 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 335 |
| Conread position: | 208-906 |
| Cow position: | chrX:25325020-25324321 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 222-894 |
| Cow position: | chrX:25325678-25325006 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-667 |
| Cow position: | chrX:29045097-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 224-759 |
| Cow position: | chrX:25310053-25310587 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 224-783 |
| Cow position: | chrX:25324752-25324197 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 306 |
| Conread position: | 224-823 |
| Cow position: | chrX:25309969-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 310 |
| Conread position: | 224-827 |
| Cow position: | chrX:29045265-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 224-849 |
| Cow position: | chrX:25325256-25324631 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 306 |
| Conread position: | 224-889 |
| Cow position: | chrX:25309885-25310550 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 394 |
| Conread position: | 224-893 |
| Cow position: | chrX:25309717-25310386 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 224-905 |
| Cow position: | chrX:25309801-25310482 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 224-905 |
| Cow position: | chrX:25325424-25324743 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 228-827 |
| Cow position: | chrX:25324832-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 408 |
| Conread position: | 228-855 |
| Cow position: | chrX:25325756-25325129 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 569 |
| Conread position: | 228-894 |
| Cow position: | chrX:25324916-25324250 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 228-894 |
| Cow position: | chrX:25325336-25324670 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 386 |
| Conread position: | 228-894 |
| Cow position: | chrX:25325588-25324922 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 569 |
| Conread position: | 229-893 |
| Cow position: | chrX:29045743-29045100 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 298 |
| Conread position: | 238-776 |
| Cow position: | chrX:13826771-13826233 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 238-888 |
| Cow position: | chrX:25325494-25324844 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 391 |
| Conread position: | 238-905 |
| Cow position: | chrX:25325830-25325163 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 544, 536 |
| Conread position: | 244-649 |
| Cow position: | chrX:14181291-14180887 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 400, 0 |
| Conread position: | 253-893 |
| Cow position: | chrX:13826924-13826284 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 257-894 |
| Cow position: | chrX:25309667-25310303 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 15 |
| Conread position: | 282-845 |
| Cow position: | chrX:14181505-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 94 |
| Conread position: | 291-889 |
| Cow position: | chrX:29045282-29044684 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-714 |
| Cow position: | chrX:13826633-13826211 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-748 |
| Cow position: | chrX:29045113-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 238 |
| Conread position: | 292-856 |
| Cow position: | chrX:13826801-13826237 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 68 |
| Conread position: | 293-894 |
| Cow position: | chrX:29045361-29044763 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 29 |
| Conread position: | 298-519 |
| Cow position: | chrX:12627842-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 298-905 |
| Cow position: | chrX:29045758-29045172 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 321 |
| Conread position: | 299-882 |
| Cow position: | chrX:12627342-12627922 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 367 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 304-856 |
| Cow position: | chrX:12627430-12627980 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 52 |
| Conread position: | 308-709 |
| Cow position: | chrX:29045832-29045431 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 316-894 |
| Cow position: | chrX:14181639-14181061 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 196 |
| Conread position: | 377-905 |
| Cow position: | chrX:29045361-29044836 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 394-816 |
| Cow position: | chrX:29045830-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 412-885 |
| Cow position: | chrX:13826933-13826460 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 109, 125 |
| Conread position: | 459-855 |
| Cow position: | chrX:12627333-12627727 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 77, 62 |
| Conread position: | 465-905 |
| Cow position: | chrX:25325857-25325415 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 477-893 |
| Cow position: | chrX:29045831-29045415 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 490-854 |
| Cow position: | chrX:12627280-12627643 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 556-894 |
| Cow position: | chrX:29045836-29045498 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 579-885 |
| Cow position: | chrX:13826934-13826628 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 102 |
Show alignments to all cow chromosomes.