Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-141
Cow position: chr16:48875704-48875843 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 81, 49

Conread position: 1-157
Cow position: chr16:51216846-51216995 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 147, 41

Conread position: 1-159
Cow position: chr16:23054027-23053874 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 46

Conread position: 1-160
Cow position: chr16:10011649-10011803 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 48

Conread position: 1-160
Cow position: chr16:21974759-21974914 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 92, 33

Conread position: 1-160
Cow position: chr16:51598414-51598563 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr16:8065686-8065839 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr16:9097225-9097072 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr16:12251222-12251068 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 85, 11

Conread position: 1-161
Cow position: chr16:13306672-13306823 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr16:15714311-15714158 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr16:38743227-38743073 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 1-161
Cow position: chr16:43308366-43308512 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 1-161
Cow position: chr16:46433125-46433276 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-161
Cow position: chr16:47274525-47274678 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr16:51393188-51393342 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 48

Conread position: 1-161
Cow position: chr16:56595188-56595341 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 1-164
Cow position: chr16:15905044-15905204 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 11, 31

Conread position: 1-165
Cow position: chr16:34153370-34153526 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 1-166
Cow position: chr16:12324653-12324499 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr16:3032515-3032675 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 1-168
Cow position: chr16:10249617-10249777 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr16:17617162-17617321 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 1-168
Cow position: chr16:17665854-17665695 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr16:21442410-21442569 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 96, 17

Conread position: 1-168
Cow position: chr16:23564337-23564174 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 102, 42

Conread position: 1-168
Cow position: chr16:24672661-24672821 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 93, 48

Conread position: 1-168
Cow position: chr16:34998423-34998584 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 102, 41

Conread position: 1-168
Cow position: chr16:40446467-40446303 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 96, 48

Conread position: 1-169
Cow position: chr16:44138292-44138451 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 1-171
Cow position: chr16:50442751-50442588 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 96, 48

Conread position: 1-172
Cow position: chr16:56082163-56082326 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr16:7928183-7928347 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 1-173
Cow position: chr16:17180358-17180197 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 138, 30

Conread position: 1-173
Cow position: chr16:18047953-18048117 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr16:28444288-28444452 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr16:29311727-29311561 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 96, 47

Conread position: 1-173
Cow position: chr16:33073686-33073843 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr16:39029894-39030061 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 1-178
Cow position: chr16:33705001-33704838 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 48

Conread position: 1-181
Cow position: chr16:10033064-10032893 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-188
Cow position: chr16:20614695-20614521 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 44

Conread position: 2-158
Cow position: chr16:40029687-40029832 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 2-160
Cow position: chr16:7441902-7442051 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 2-161
Cow position: chr16:28199226-28199077 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 3-158
Cow position: chr16:31559101-31558953 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-160
Cow position: chr16:16232256-16232106 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-160
Cow position: chr16:32301805-32301956 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 3-160
Cow position: chr16:38663511-38663661 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 3-160
Cow position: chr16:46184358-46184207 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 40

Conread position: 3-161
Cow position: chr16:7665837-7665686 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr16:8809900-8810045 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr16:9560288-9560446 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 43

Conread position: 3-161
Cow position: chr16:20743119-20743265 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 3-161
Cow position: chr16:42992416-42992265 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr16:46548065-46548220 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 87, 46

Conread position: 3-168
Cow position: chr16:16543049-16542891 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 3-168
Cow position: chr16:19282204-19282047 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 3-168
Cow position: chr16:21002175-21002333 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 3-172
Cow position: chr16:15407359-15407520 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-173
Cow position: chr16:24674476-24674640 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 91, 7

Conread position: 3-203
Cow position: chr16:27326925-27327118 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 175, 46

Conread position: 4-136
Cow position: chr16:35297598-35297477 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 4-173
Cow position: chr16:27051244-27051083 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 4-178
Cow position: chr16:46552988-46552827 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 5-160
Cow position: chr16:25419056-25419204 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 5-161
Cow position: chr16:2223199-2223348 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 8-160
Cow position: chr16:33646207-33646065 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 8-165
Cow position: chr16:29060576-29060422 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 41

Conread position: 10-161
Cow position: chr16:7910602-7910754 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 52

Conread position: 11-161
Cow position: chr16:33290576-33290433 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 11-166
Cow position: chr16:8083738-8083886 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 38

Conread position: 11-173
Cow position: chr16:5382375-5382219 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 102, 34

Conread position: 11-181
Cow position: chr16:29038106-29037945 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 12-161
Cow position: chr16:7812881-7812739 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 12-161
Cow position: chr16:15949320-15949459 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 12-166
Cow position: chr16:51143987-51143843 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 30

Conread position: 12-168
Cow position: chr16:13698706-13698557 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 12-172
Cow position: chr16:31241104-31241255 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 15-180
Cow position: chr16:24202676-24202836 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 27

Conread position: 15-187
Cow position: chr16:9730019-9730182 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 40-173
Cow position: chr16:38390147-38390017 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 45-168
Cow position: chr16:43758479-43758604 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 55-158
Cow position: chr16:8522235-8522338 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 55-161
Cow position: chr16:9596519-9596419 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 55-168
Cow position: chr16:34412957-34412850 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 55-173
Cow position: chr16:20205616-20205499 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 55-178
Cow position: chr16:4192279-4192401 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 55-178
Cow position: chr16:12220838-12220714 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 110

Show alignments to all cow chromosomes.