Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-156
Cow position: chr18:17390825-17390974 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 48

Conread position: 1-156
Cow position: chr18:38211324-38211176 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 1-159
Cow position: chr18:37690316-37690167 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr18:23809956-23810104 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-161
Cow position: chr18:1571074-1571222 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 1-161
Cow position: chr18:3709396-3709245 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr18:5189526-5189678 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr18:10214026-10214176 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 155, 48

Conread position: 1-161
Cow position: chr18:16659263-16659417 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 105, 48

Conread position: 1-161
Cow position: chr18:21528815-21528662 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 140, 48

Conread position: 1-161
Cow position: chr18:31159107-31159258 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 44

Conread position: 1-161
Cow position: chr18:39623969-39623815 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 48

Conread position: 1-161
Cow position: chr18:42427781-42427635 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr18:50004541-50004690 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-162
Cow position: chr18:5632430-5632282 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-163
Cow position: chr18:9642711-9642871 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 1-163
Cow position: chr18:50959654-50959501 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 1-166
Cow position: chr18:4489736-4489898 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 41

Conread position: 1-166
Cow position: chr18:45903731-45903887 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr18:49602877-49603033 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-168
Cow position: chr18:2773222-2773384 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 93, 42

Conread position: 1-168
Cow position: chr18:14871439-14871596 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 1-168
Cow position: chr18:27079032-27078872 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr18:29372035-29371875 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-168
Cow position: chr18:35795055-35795214 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr18:49970486-49970645 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 1-168
Cow position: chr18:52387053-52387212 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1-169
Cow position: chr18:8208258-8208417 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 105, 41

Conread position: 1-171
Cow position: chr18:2576528-2576694 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 48

Conread position: 1-171
Cow position: chr18:3164348-3164508 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-172
Cow position: chr18:21751545-21751383 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr18:237948-238112 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 1-173
Cow position: chr18:22045246-22045409 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr18:44514255-44514090 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 105, 44

Conread position: 1-176
Cow position: chr18:47175213-47175380 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 2-161
Cow position: chr18:10668499-10668348 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 2-161
Cow position: chr18:31556993-31557145 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 32, 0

Conread position: 2-173
Cow position: chr18:37187830-37187993 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 3-153
Cow position: chr18:7487398-7487255 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 3-160
Cow position: chr18:11657822-11657672 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 3-160
Cow position: chr18:16382024-16381874 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 3-161
Cow position: chr18:24266240-24266392 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 93, 46

Conread position: 3-161
Cow position: chr18:43283593-43283741 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 3-176
Cow position: chr18:52251691-52251856 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 3-176
Cow position: chr18:55692981-55692817 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-187
Cow position: chr18:3212043-3211868 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 4-159
Cow position: chr18:46048916-46048769 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 4-161
Cow position: chr18:35857762-35857909 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 4-173
Cow position: chr18:39662943-39662783 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 93, 45

Conread position: 8-161
Cow position: chr18:35874236-35874093 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 11-157
Cow position: chr18:25757159-25757297 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 11-160
Cow position: chr18:34490436-34490297 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 11-161
Cow position: chr18:12273809-12273673 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 11-161
Cow position: chr18:34389226-34389368 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 11-166
Cow position: chr18:49440998-49440851 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 11-176
Cow position: chr18:24022770-24022619 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 11-176
Cow position: chr18:47417155-47417003 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 15-176
Cow position: chr18:23821673-23821831 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 21, 10

Conread position: 47-161
Cow position: chr18:23446932-23447046 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 9, 49

Conread position: 55-161
Cow position: chr18:21782807-21782702 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 55-168
Cow position: chr18:24508106-24508222 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 31, 112

Conread position: 55-172
Cow position: chr18:47920867-47920751 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 55-174
Cow position: chr18:41253661-41253543 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 55-176
Cow position: chr18:52383025-52382905 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 56-161
Cow position: chr18:35171468-35171363 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 57-188
Cow position: chr18:15351609-15351742 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 108

Conread position: 60-161
Cow position: chr18:45185988-45185887 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.