Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-128
Cow position: chr22:5644229-5644349 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-153
Cow position: chr22:29546832-29546692 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 117, 41

Conread position: 1-156
Cow position: chr22:22013944-22013800 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 1-157
Cow position: chr22:12678226-12678373 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 1-157
Cow position: chr22:31870060-31870208 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 1-158
Cow position: chr22:7140843-7140692 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 1-158
Cow position: chr22:30607054-30606904 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 1-159
Cow position: chr22:12981530-12981678 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr22:6754068-6754221 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 151, 48

Conread position: 1-160
Cow position: chr22:19413839-19413991 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:1065302-1065149 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr22:1074462-1074309 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:4156885-4157037 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 95, 48

Conread position: 1-161
Cow position: chr22:5595613-5595766 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:6149193-6149346 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:7496912-7497065 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:11497692-11497539 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 46

Conread position: 1-161
Cow position: chr22:12902661-12902810 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:19306096-19305943 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr22:30615926-30615775 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr22:33031004-33030843 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 50

Conread position: 1-161
Cow position: chr22:35215746-35215593 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr22:39446489-39446336 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr22:39602481-39602327 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 12, 41

Conread position: 1-163
Cow position: chr22:25312710-25312552 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 1-166
Cow position: chr22:7518749-7518595 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr22:17852443-17852596 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr22:24134128-24134286 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 1-166
Cow position: chr22:44717915-44717761 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 1-168
Cow position: chr22:9075606-9075445 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 49

Conread position: 1-168
Cow position: chr22:14690764-14690933 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 97

Conread position: 1-168
Cow position: chr22:16541454-16541614 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr22:16813990-16813836 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr22:33447883-33448043 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-169
Cow position: chr22:11131064-11130908 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-171
Cow position: chr22:10594805-10594644 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 101, 48

Conread position: 1-172
Cow position: chr22:18403442-18403280 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr22:12673137-12673301 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr22:12929083-12929246 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr22:27681919-27681755 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr22:35627545-35627382 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1-173
Cow position: chr22:39215417-39215581 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr22:47820633-47820472 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 1-174
Cow position: chr22:4736221-4736056 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-174
Cow position: chr22:23209762-23209597 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-178
Cow position: chr22:47562906-47562734 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 44

Conread position: 1-181
Cow position: chr22:8090340-8090506 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-183
Cow position: chr22:4632475-4632291 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 111

Conread position: 1-187
Cow position: chr22:6106176-6106356 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 48

Conread position: 2-161
Cow position: chr22:1326622-1326464 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 14

Conread position: 2-163
Cow position: chr22:16533266-16533117 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 2-168
Cow position: chr22:1776257-1776097 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 133, 33

Conread position: 2-172
Cow position: chr22:11790180-11790018 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 2-173
Cow position: chr22:1588489-1588328 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 2-188
Cow position: chr22:16639502-16639322 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 40

Conread position: 3-150
Cow position: chr22:30293883-30293744 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 3-159
Cow position: chr22:14488131-14487982 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 3-161
Cow position: chr22:6852388-6852539 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 3-161
Cow position: chr22:39471962-39472112 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr22:43130948-43131099 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 136, 42

Conread position: 3-162
Cow position: chr22:9372719-9372565 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 92, 46

Conread position: 3-163
Cow position: chr22:17652625-17652478 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-165
Cow position: chr22:18926549-18926397 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 3-168
Cow position: chr22:29219709-29219867 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 46

Conread position: 3-171
Cow position: chr22:27275658-27275498 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 3-171
Cow position: chr22:30176913-30176753 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 3-172
Cow position: chr22:1106263-1106102 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 3-176
Cow position: chr22:22860718-22860881 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 3-178
Cow position: chr22:13866861-13866694 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-187
Cow position: chr22:14641663-14641837 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 3-202
Cow position: chr22:40590986-40590785 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 150

Conread position: 4-161
Cow position: chr22:1830235-1830093 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 4-161
Cow position: chr22:4156624-4156772 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 4-168
Cow position: chr22:35578584-35578739 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 4-173
Cow position: chr22:45104073-45104237 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 91, 38

Conread position: 4-192
Cow position: chr22:37202040-37201865 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 5-160
Cow position: chr22:3470480-3470335 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 5-161
Cow position: chr22:530387-530533 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 7-157
Cow position: chr22:31790787-31790933 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 8-161
Cow position: chr22:20166673-20166818 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 10-169
Cow position: chr22:35533043-35533198 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 71, 39

Conread position: 10-181
Cow position: chr22:36762224-36762064 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 11-161
Cow position: chr22:1046003-1046147 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 86, 38

Conread position: 11-161
Cow position: chr22:12389287-12389144 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 11-169
Cow position: chr22:4075700-4075849 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 12-161
Cow position: chr22:2704483-2704343 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 12-161
Cow position: chr22:23265465-23265607 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 12-161
Cow position: chr22:30583841-30583699 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 12-169
Cow position: chr22:14378508-14378658 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 37

Conread position: 12-176
Cow position: chr22:1819347-1819505 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 153, 37

Conread position: 13-161
Cow position: chr22:8331183-8331043 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 13-163
Cow position: chr22:18966967-18967118 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 44, 52

Conread position: 13-181
Cow position: chr22:32698946-32698786 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 14-176
Cow position: chr22:9346854-9347016 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 28, 136

Conread position: 15-158
Cow position: chr22:18441265-18441129 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 18-161
Cow position: chr22:18933533-18933671 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 118, 27

Conread position: 22-178
Cow position: chr22:15737415-15737263 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 32, 14

Conread position: 54-161
Cow position: chr22:6686570-6686677 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 54-164
Cow position: chr22:1320644-1320536 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 55-158
Cow position: chr22:14676836-14676733 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 55-161
Cow position: chr22:3301188-3301294 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 55-171
Cow position: chr22:24557376-24557490 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Show alignments to all cow chromosomes.