Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-146
Cow position: chr23:27307949-27307811 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-155
Cow position: chr23:3890371-3890518 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 41

Conread position: 1-158
Cow position: chr23:35239552-35239404 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr23:164966-164810 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 1-161
Cow position: chr23:799465-799618 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr23:4003850-4003697 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr23:20557641-20557794 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr23:33232499-33232651 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr23:35930149-35930001 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1-166
Cow position: chr23:24718602-24718756 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr23:8698626-8698464 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 41

Conread position: 1-168
Cow position: chr23:12363418-12363574 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr23:13137738-13137892 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr23:23104289-23104444 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr23:35656610-35656452 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 94, 48

Conread position: 1-169
Cow position: chr23:29330511-29330351 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-172
Cow position: chr23:5605466-5605299 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 123, 48

Conread position: 1-172
Cow position: chr23:5612726-5612559 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 123, 48

Conread position: 1-173
Cow position: chr23:4291558-4291394 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr23:5617776-5617613 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr23:16582705-16582870 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 11, 49

Conread position: 1-173
Cow position: chr23:35527282-35527119 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-180
Cow position: chr23:21539358-21539186 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 105, 46

Conread position: 1-192
Cow position: chr23:10853248-10853067 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 2-160
Cow position: chr23:10497896-10497749 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 48

Conread position: 2-161
Cow position: chr23:3204986-3204829 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 41

Conread position: 2-173
Cow position: chr23:37993376-37993211 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 47

Conread position: 3-156
Cow position: chr23:5436441-5436587 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 9

Conread position: 3-160
Cow position: chr23:187378-187230 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr23:1656093-1655945 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 3-161
Cow position: chr23:3270498-3270349 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 3-161
Cow position: chr23:4521682-4521834 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 46

Conread position: 3-163
Cow position: chr23:5436801-5436954 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 40

Conread position: 3-163
Cow position: chr23:17462791-17462638 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-169
Cow position: chr23:4803162-4803002 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 3-169
Cow position: chr23:30617277-30617435 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 3-169
Cow position: chr23:39813701-39813541 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 162, 46

Conread position: 3-173
Cow position: chr23:32126504-32126345 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 3-176
Cow position: chr23:38229-38064 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 3-176
Cow position: chr23:307657-307492 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 39, 0

Conread position: 3-176
Cow position: chr23:3982981-3983155 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 56, 91

Conread position: 3-176
Cow position: chr23:4416086-4416251 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-176
Cow position: chr23:39056957-39056793 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 129, 31

Conread position: 4-161
Cow position: chr23:1480840-1480690 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 4-161
Cow position: chr23:10676052-10675902 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 11-158
Cow position: chr23:18739270-18739410 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 11-160
Cow position: chr23:26975276-26975413 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 11-161
Cow position: chr23:9726348-9726491 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 11-161
Cow position: chr23:27526777-27526635 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 11-163
Cow position: chr23:21664503-21664353 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 71

Conread position: 11-169
Cow position: chr23:32621479-32621327 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 154, 38

Conread position: 11-176
Cow position: chr23:3234587-3234745 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 38

Conread position: 12-168
Cow position: chr23:24779350-24779499 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 55-158
Cow position: chr23:36307558-36307660 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 55-176
Cow position: chr23:306679-306559 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 55-176
Cow position: chr23:3979605-3979726 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 109

Conread position: 56-176
Cow position: chr23:1701327-1701208 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 58-181
Cow position: chr23:38118111-38117989 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 105, 0

Show alignments to all cow chromosomes.