Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070085.5 |
| Conread position: | 1-156 |
| Cow position: | chr25:33555804-33555656 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | chr25:432852-433002 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-161 |
| Cow position: | chr25:11957000-11956850 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | chr25:33272834-33272679 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 118, 41 |
| Conread position: | 1-164 |
| Cow position: | chr25:11373693-11373857 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 1-166 |
| Cow position: | chr25:3744538-3744704 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 1-168 |
| Cow position: | chr25:22373290-22373451 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-168 |
| Cow position: | chr25:33100768-33100614 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-169 |
| Cow position: | chr25:16921597-16921758 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 1-172 |
| Cow position: | chr25:12305475-12305312 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | chr25:7726861-7726697 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | chr25:22768414-22768253 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-173 |
| Cow position: | chr25:35052422-35052587 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 2-161 |
| Cow position: | chr25:26679422-26679272 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-173 |
| Cow position: | chr25:5808143-5807980 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 3-161 |
| Cow position: | chr25:7185079-7185230 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 3-161 |
| Cow position: | chr25:8410839-8410988 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-161 |
| Cow position: | chr25:31514378-31514227 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-173 |
| Cow position: | chr25:22154225-22154059 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 4-166 |
| Cow position: | chr25:4157054-4157205 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-166 |
| Cow position: | chr25:18288577-18288728 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-173 |
| Cow position: | chr25:17919170-17919009 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 6-166 |
| Cow position: | chr25:26306012-26306163 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 8-166 |
| Cow position: | chr25:22571148-22570999 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 9-185 |
| Cow position: | chr25:11855359-11855526 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 11-158 |
| Cow position: | chr25:36370007-36369868 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 11-158 |
| Cow position: | chr25:36375698-36375559 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 11-161 |
| Cow position: | chr25:7380652-7380793 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 11-166 |
| Cow position: | chr25:7673493-7673342 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 11-168 |
| Cow position: | chr25:17119930-17119781 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-168 |
| Cow position: | chr25:26061538-26061688 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-172 |
| Cow position: | chr25:5846619-5846773 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 13-155 |
| Cow position: | chr25:22119472-22119605 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 55-161 |
| Cow position: | chr25:18568065-18568171 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-161 |
| Cow position: | chr25:36535268-36535374 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-165 |
| Cow position: | chr25:20008283-20008175 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 55-172 |
| Cow position: | chr25:9640885-9641001 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 55-176 |
| Cow position: | chr25:17474361-17474481 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 56-178 |
| Cow position: | chr25:7311245-7311366 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.