Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070085.5 |
| Conread position: | 1-145 |
| Cow position: | |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 50 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 1-153 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-157 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-160 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-160 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 138, 48 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 160, 48 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 41 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-174 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-176 |
| Cow position: | |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 50 |
| Conread position: | 1-176 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-187 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-149 |
| Cow position: | |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 2-161 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 2-174 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 3-153 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 3-158 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-165 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-173 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 3-176 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 39 |
| Conread position: | 3-181 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 4-176 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 6-169 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 7-159 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 8-161 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 9-171 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 10-229 |
| Cow position: | |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 11-161 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-163 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-165 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 11-169 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 12-156 |
| Cow position: | |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 12-161 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 12-161 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 12-161 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 12-163 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 13-173 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 46-161 |
| Cow position: | |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-161 |
| Cow position: | |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-173 |
| Cow position: | |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 55-161 |
| Cow position: | |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 55-161 |
| Cow position: | |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 55-173 |
| Cow position: | |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 55-176 |
| Cow position: | |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 57-162 |
| Cow position: | |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.