Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-145
Cow position: chr27:28896634-28896773 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 50

Conread position: 1-150
Cow position: chr27:26481440-26481296 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 51

Conread position: 1-153
Cow position: chr27:24952194-24952054 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 37, 0

Conread position: 1-157
Cow position: chr27:16275922-16275775 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr27:21054215-21054365 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-159
Cow position: chr27:19576565-19576417 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 49

Conread position: 1-159
Cow position: chr27:28922137-28921986 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr27:19779635-19779784 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 1-160
Cow position: chr27:23594077-23594229 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 1-161
Cow position: chr27:11208799-11208646 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr27:11480880-11480728 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-161
Cow position: chr27:11982890-11982738 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr27:15669016-15668863 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr27:16103569-16103719 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr27:18791756-18791601 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 138, 48

Conread position: 1-161
Cow position: chr27:20897262-20897113 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr27:21978385-21978230 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 33

Conread position: 1-161
Cow position: chr27:27438750-27438597 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr27:178621-178776 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr27:7412151-7412306 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 49

Conread position: 1-166
Cow position: chr27:10581292-10581446 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr27:11133846-11134000 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr27:23452221-23452375 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr27:31183331-31183489 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 9

Conread position: 1-168
Cow position: chr27:19074265-19074107 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr27:22583501-22583662 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 93, 48

Conread position: 1-168
Cow position: chr27:28932044-28931886 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-172
Cow position: chr27:18507403-18507568 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 30, 0

Conread position: 1-173
Cow position: chr27:4487022-4486856 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 160, 48

Conread position: 1-173
Cow position: chr27:9504311-9504476 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr27:12284752-12284914 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-173
Cow position: chr27:18558116-18558280 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr27:20266468-20266306 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr27:23232670-23232835 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 41

Conread position: 1-173
Cow position: chr27:26118255-26118419 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 1-173
Cow position: chr27:29877718-29877553 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-174
Cow position: chr27:15453971-15454131 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 1-176
Cow position: chr27:30868993-30868818 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 50

Conread position: 1-176
Cow position: chr27:31386872-31386709 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-187
Cow position: chr27:26112160-26111982 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 2-149
Cow position: chr27:26467802-26467662 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 2-158
Cow position: chr27:12459047-12459194 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 40

Conread position: 2-161
Cow position: chr27:29693226-29693386 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 43

Conread position: 2-174
Cow position: chr27:24331473-24331641 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 3-153
Cow position: chr27:30441462-30441605 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 42

Conread position: 3-158
Cow position: chr27:7935395-7935252 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 3-161
Cow position: chr27:2592297-2592450 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 88, 46

Conread position: 3-161
Cow position: chr27:10979620-10979771 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr27:26245786-26245635 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-165
Cow position: chr27:31157570-31157724 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 3-173
Cow position: chr27:672424-672587 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 105, 31

Conread position: 3-176
Cow position: chr27:16965335-16965501 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 162, 39

Conread position: 3-181
Cow position: chr27:8062592-8062423 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 47

Conread position: 4-176
Cow position: chr27:21951219-21951056 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 6-169
Cow position: chr27:22602938-22603101 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 43

Conread position: 7-159
Cow position: chr27:26624971-26625115 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 8-161
Cow position: chr27:13318212-13318066 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 9-171
Cow position: chr27:23177546-23177395 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 10-229
Cow position: chr27:15434083-15434300 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 12, 25

Conread position: 11-161
Cow position: chr27:26314357-26314215 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 11-163
Cow position: chr27:30914775-30914920 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 11-165
Cow position: chr27:26317834-26317978 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 11-169
Cow position: chr27:16705021-16705166 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 12-156
Cow position: chr27:27012465-27012602 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 12-161
Cow position: chr27:232320-232462 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 12-161
Cow position: chr27:23554560-23554419 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 12-161
Cow position: chr27:26909819-26909683 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 12-163
Cow position: chr27:19660697-19660842 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 83, 22

Conread position: 13-173
Cow position: chr27:26188597-26188749 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 36, 0

Conread position: 46-161
Cow position: chr27:5553263-5553378 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 54-161
Cow position: chr27:26154122-26154229 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 54-173
Cow position: chr27:27747664-27747546 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 55-161
Cow position: chr27:17908456-17908351 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 87, 0

Conread position: 55-161
Cow position: chr27:24303745-24303855 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 55-173
Cow position: chr27:30261090-30260973 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 55-176
Cow position: chr27:23060311-23060191 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 57-162
Cow position: chr27:20045698-20045804 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.