Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-158
Cow position: chr28:2821464-2821314 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr28:4013286-4013140 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr28:9705859-9705706 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 40

Conread position: 1-160
Cow position: chr28:5441694-5441844 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 1-160
Cow position: chr28:10615747-10615892 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 1-160
Cow position: chr28:16856903-16857053 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr28:3423980-3423830 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr28:4077134-4077293 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 81, 47

Conread position: 1-161
Cow position: chr28:4159167-4159008 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 41

Conread position: 1-161
Cow position: chr28:4282286-4282438 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr28:14657919-14657766 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr28:21263357-21263210 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr28:21845154-21845010 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 1-161
Cow position: chr28:25518553-25518712 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 80, 30

Conread position: 1-166
Cow position: chr28:3492584-3492736 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-166
Cow position: chr28:3759200-3759038 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 84, 48

Conread position: 1-166
Cow position: chr28:8787742-8787588 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 48

Conread position: 1-166
Cow position: chr28:17740028-17739870 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr28:21868660-21868505 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 117, 41

Conread position: 1-168
Cow position: chr28:11828756-11828916 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr28:34830357-34830200 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 1-169
Cow position: chr28:13356163-13356326 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 87, 48

Conread position: 1-171
Cow position: chr28:3726005-3726165 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-173
Cow position: chr28:659084-659253 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-173
Cow position: chr28:5236392-5236562 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 41

Conread position: 1-173
Cow position: chr28:7350853-7350696 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-173
Cow position: chr28:8347937-8347773 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 7

Conread position: 1-173
Cow position: chr28:10252712-10252875 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr28:11346286-11346445 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-173
Cow position: chr28:19262381-19262545 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-178
Cow position: chr28:16200537-16200706 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 2-161
Cow position: chr28:19994744-19994897 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 47

Conread position: 2-163
Cow position: chr28:751430-751278 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 2-173
Cow position: chr28:8716178-8716346 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 47

Conread position: 3-142
Cow position: chr28:19127971-19128103 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-153
Cow position: chr28:8165012-8165155 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 3-157
Cow position: chr28:17620158-17620304 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-158
Cow position: chr28:4163379-4163527 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-158
Cow position: chr28:24767609-24767460 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 3-161
Cow position: chr28:3011066-3011218 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 136, 49

Conread position: 3-161
Cow position: chr28:17737949-17738100 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr28:32014986-32014837 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 3-168
Cow position: chr28:6283289-6283444 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-168
Cow position: chr28:12951617-12951463 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 3-176
Cow position: chr28:117557-117724 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 47

Conread position: 3-176
Cow position: chr28:118815-118648 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 47

Conread position: 3-178
Cow position: chr28:2892457-2892289 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 97, 46

Conread position: 3-178
Cow position: chr28:5630300-5630135 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 3-193
Cow position: chr28:11307317-11307496 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 32

Conread position: 4-161
Cow position: chr28:8259832-8259681 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 45

Conread position: 8-176
Cow position: chr28:26269595-26269425 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 158

Conread position: 11-157
Cow position: chr28:6563701-6563840 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 11-161
Cow position: chr28:6301277-6301134 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 11-173
Cow position: chr28:27218518-27218365 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 11-174
Cow position: chr28:21118873-21118719 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 11-176
Cow position: chr28:26826415-26826258 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 11-181
Cow position: chr28:7644937-7644774 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 137, 31

Conread position: 12-161
Cow position: chr28:17680817-17680675 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 12-173
Cow position: chr28:11398602-11398755 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 12-181
Cow position: chr28:7697787-7697948 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 13-158
Cow position: chr28:3311030-3311168 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 55-160
Cow position: chr28:21363899-21363794 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 55-161
Cow position: chr28:4307737-4307844 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 55-171
Cow position: chr28:13048125-13048240 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 55-178
Cow position: chr28:4022832-4022710 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 57-176
Cow position: chr28:28765746-28765864 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.