Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-158
Cow position: chr4:19463738-19463588 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 41

Conread position: 1-158
Cow position: chr4:42608929-42608782 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-160
Cow position: chr4:38946409-38946257 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr4:56746184-56746031 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 105, 41

Conread position: 1-161
Cow position: chr4:7043627-7043779 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr4:25197300-25197454 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 104, 48

Conread position: 1-161
Cow position: chr4:36876666-36876817 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr4:45483994-45483839 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 44

Conread position: 1-161
Cow position: chr4:54315032-54315185 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr4:56395706-56395553 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr4:56853043-56852888 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1-163
Cow position: chr4:6072861-6073016 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 1-165
Cow position: chr4:37732289-37732445 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 1-165
Cow position: chr4:39010243-39010086 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 13

Conread position: 1-165
Cow position: chr4:52823212-52823365 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr4:26659490-26659335 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 145, 48

Conread position: 1-166
Cow position: chr4:34641533-34641690 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-166
Cow position: chr4:58045442-58045600 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr4:59001948-59002104 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr4:9444492-9444653 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 48

Conread position: 1-168
Cow position: chr4:12901347-12901524 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-168
Cow position: chr4:17076087-17076245 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 93, 48

Conread position: 1-168
Cow position: chr4:22138026-22138188 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 156, 48

Conread position: 1-168
Cow position: chr4:23059662-23059822 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 96, 44

Conread position: 1-168
Cow position: chr4:31178012-31177858 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-169
Cow position: chr4:19420565-19420723 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-169
Cow position: chr4:66547573-66547734 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 94, 44

Conread position: 1-171
Cow position: chr4:45801709-45801547 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 49

Conread position: 1-173
Cow position: chr4:1985841-1985677 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 8

Conread position: 1-173
Cow position: chr4:2713667-2713830 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr4:5250381-5250217 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr4:5790836-5790672 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr4:20147375-20147213 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr4:23799562-23799736 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 79

Conread position: 1-173
Cow position: chr4:23846864-23847021 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 1-173
Cow position: chr4:26959776-26959939 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr4:28660356-28660521 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 102, 41

Conread position: 1-173
Cow position: chr4:45250163-45250000 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 1-173
Cow position: chr4:45837439-45837598 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr4:47305271-47305107 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-176
Cow position: chr4:23271474-23271309 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-176
Cow position: chr4:30944144-30943981 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 2-157
Cow position: chr4:23444849-23445001 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 47

Conread position: 2-160
Cow position: chr4:8182445-8182595 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 2-166
Cow position: chr4:17186159-17186315 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 2-166
Cow position: chr4:37915149-37915300 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 2-168
Cow position: chr4:27699229-27699065 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 32

Conread position: 2-168
Cow position: chr4:41099138-41098969 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 22, 46

Conread position: 2-176
Cow position: chr4:19709132-19708966 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 3-158
Cow position: chr4:53941605-53941753 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-160
Cow position: chr4:13668430-13668580 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 3-160
Cow position: chr4:30769220-30769077 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr4:40995922-40995771 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr4:45212998-45213146 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr4:46656322-46656170 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 92, 46

Conread position: 3-161
Cow position: chr4:56591230-56591078 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-165
Cow position: chr4:63078414-63078259 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 3-167
Cow position: chr4:19199095-19199251 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 3-168
Cow position: chr4:6093876-6094032 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-168
Cow position: chr4:23943455-23943611 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 3-168
Cow position: chr4:33389050-33388890 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 100, 42

Conread position: 3-173
Cow position: chr4:11186155-11185993 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-176
Cow position: chr4:22101073-22101238 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 3-176
Cow position: chr4:67393283-67393118 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 4-155
Cow position: chr4:44024352-44024496 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 45

Conread position: 4-161
Cow position: chr4:19102689-19102841 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 86, 41

Conread position: 4-165
Cow position: chr4:19496687-19496531 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 83, 44

Conread position: 4-166
Cow position: chr4:21874365-21874211 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 4-166
Cow position: chr4:28854089-28854239 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 4-166
Cow position: chr4:38209788-38209939 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 4-168
Cow position: chr4:50131709-50131550 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 4-169
Cow position: chr4:27276358-27276510 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 4-169
Cow position: chr4:34722697-34722854 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 4-176
Cow position: chr4:25802881-25802717 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 5-173
Cow position: chr4:27691484-27691643 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 10-176
Cow position: chr4:50837884-50837728 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 10-176
Cow position: chr4:54937275-54937108 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 35

Conread position: 11-161
Cow position: chr4:32693968-32693829 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 11-162
Cow position: chr4:63198185-63198332 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 33

Conread position: 11-163
Cow position: chr4:61608788-61608926 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 11-171
Cow position: chr4:47230816-47230966 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 11-171
Cow position: chr4:47283831-47283981 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 11-173
Cow position: chr4:32562012-32561859 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 11-176
Cow position: chr4:44772859-44773016 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 12-158
Cow position: chr4:27511727-27511588 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 33

Conread position: 12-161
Cow position: chr4:53050174-53050033 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 12-165
Cow position: chr4:48138123-48137980 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 12-187
Cow position: chr4:30845564-30845387 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 26

Conread position: 14-173
Cow position: chr4:4647579-4647429 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 22-181
Cow position: chr4:12004387-12004236 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 47-168
Cow position: chr4:24371705-24371826 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 63

Conread position: 54-173
Cow position: chr4:20282389-20282271 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 55-158
Cow position: chr4:2099777-2099674 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 55-158
Cow position: chr4:46455922-46456025 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 55-161
Cow position: chr4:22050969-22051075 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 55-165
Cow position: chr4:34383195-34383305 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 55-168
Cow position: chr4:21520725-21520612 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 55-173
Cow position: chr4:28836681-28836566 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 55-176
Cow position: chr4:17790151-17790265 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.