Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-151
Cow position: chr6:34911237-34911401 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 1-157
Cow position: chr6:3952759-3952610 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 1-157
Cow position: chr6:15243077-15242928 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr6:47989664-47989516 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-159
Cow position: chr6:28148502-28148346 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-160
Cow position: chr6:12669336-12669184 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 48

Conread position: 1-160
Cow position: chr6:42483653-42483503 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr6:14913996-14914148 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-161
Cow position: chr6:21535278-21535127 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr6:28561930-28562081 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr6:35984896-35985049 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr6:45159817-45159970 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr6:58725605-58725457 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1-165
Cow position: chr6:18608572-18608728 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-165
Cow position: chr6:46558292-46558141 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr6:24468161-24468313 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 1-167
Cow position: chr6:3937025-3936864 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 41

Conread position: 1-168
Cow position: chr6:16137529-16137690 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 113, 48

Conread position: 1-168
Cow position: chr6:22850014-22850174 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-168
Cow position: chr6:29852817-29852985 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 71

Conread position: 1-168
Cow position: chr6:50771123-50771282 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1-168
Cow position: chr6:53732223-53732062 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 33

Conread position: 1-168
Cow position: chr6:59687572-59687732 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr6:62670109-62669946 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 72, 48

Conread position: 1-169
Cow position: chr6:8369662-8369502 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 1-171
Cow position: chr6:28559779-28559616 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 49

Conread position: 1-172
Cow position: chr6:36225348-36225186 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-172
Cow position: chr6:57079664-57079501 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr6:8186949-8187113 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr6:19936330-19936493 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr6:21052208-21052373 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 33

Conread position: 1-173
Cow position: chr6:26054662-26054828 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 102, 48

Conread position: 1-173
Cow position: chr6:26408264-26408428 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr6:35171852-35171682 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 116, 90

Conread position: 1-173
Cow position: chr6:49686058-49685894 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr6:54821072-54820908 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr6:57467837-57467673 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-176
Cow position: chr6:67574628-67574462 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-178
Cow position: chr6:19563241-19563412 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 34

Conread position: 1-180
Cow position: chr6:21004918-21004746 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 97, 34

Conread position: 1-180
Cow position: chr6:55296854-55297025 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 2-176
Cow position: chr6:5330651-5330486 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 3-151
Cow position: chr6:60088239-60088378 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-154
Cow position: chr6:23381430-23381574 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-156
Cow position: chr6:22876692-22876838 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 3-157
Cow position: chr6:53932609-53932755 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-161
Cow position: chr6:14063052-14063214 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 3-161
Cow position: chr6:18447279-18447430 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr6:26764586-26764740 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 31

Conread position: 3-161
Cow position: chr6:54840264-54840420 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 3-165
Cow position: chr6:35181018-35181173 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 3-165
Cow position: chr6:44543911-44544065 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 3-166
Cow position: chr6:49824856-49825013 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 148, 46

Conread position: 3-168
Cow position: chr6:15587356-15587514 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-168
Cow position: chr6:31928875-31928717 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 3-168
Cow position: chr6:54828084-54828243 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 159, 44

Conread position: 3-168
Cow position: chr6:57089440-57089284 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-171
Cow position: chr6:59101083-59101243 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 3-172
Cow position: chr6:24110520-24110359 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 3-173
Cow position: chr6:5445904-5445744 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 3-176
Cow position: chr6:21475961-21475801 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-181
Cow position: chr6:16411849-16411679 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 4-163
Cow position: chr6:48436065-48435916 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 4-166
Cow position: chr6:12761515-12761362 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 4-166
Cow position: chr6:38853421-38853576 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 103, 38

Conread position: 4-176
Cow position: chr6:15937617-15937781 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 5-160
Cow position: chr6:32006222-32006366 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 5-161
Cow position: chr6:10039960-10039811 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 5-192
Cow position: chr6:40833787-40833958 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 8-140
Cow position: chr6:31778950-31778819 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 8-165
Cow position: chr6:51835629-51835483 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 9-158
Cow position: chr6:41733865-41733723 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 10-150
Cow position: chr6:30688280-30688413 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 10-176
Cow position: chr6:15058604-15058450 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 11-158
Cow position: chr6:43906453-43906593 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 11-159
Cow position: chr6:16016263-16016123 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 11-160
Cow position: chr6:15974295-15974435 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 11-160
Cow position: chr6:19045856-19045711 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 71, 33

Conread position: 11-161
Cow position: chr6:5095314-5095454 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 11-174
Cow position: chr6:27219394-27219244 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 11-178
Cow position: chr6:51529952-51530116 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 12-176
Cow position: chr6:48379384-48379540 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 45-163
Cow position: chr6:40032388-40032276 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 55-159
Cow position: chr6:69153603-69153499 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 55-165
Cow position: chr6:58076587-58076477 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 55-168
Cow position: chr6:18440284-18440397 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 55-169
Cow position: chr6:30895799-30895911 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 55-176
Cow position: chr6:21467074-21467194 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 55-181
Cow position: chr6:31865286-31865161 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 57-161
Cow position: chr6:7801206-7801309 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 58-163
Cow position: chr6:8125517-8125412 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.