Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01H070085.5 |
| Conread position: | 1-132 |
| Cow position: | |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 1-146 |
| Cow position: | |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-155 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-157 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-160 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 30 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-163 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-164 |
| Cow position: | |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 1-165 |
| Cow position: | |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 47 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 99, 48 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 6, 49 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 152, 41 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 2-161 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 3-159 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-160 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 3-161 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-165 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-166 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-168 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-168 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 3-169 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 3-173 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-174 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 4-157 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 4-158 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-160 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 5-161 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-146 |
| Cow position: | |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 8-176 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 41 |
| Conread position: | 10-161 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 10-168 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 10-173 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 11-153 |
| Cow position: | |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 11-161 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 11-161 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-161 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 11-161 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 11-166 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 11-168 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 11-176 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 11-178 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 13-161 |
| Cow position: | |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 13-168 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 14-161 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 35 |
| Conread position: | 14-173 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 15-174 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 21-168 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 44-163 |
| Cow position: | |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-161 |
| Cow position: | |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 55-155 |
| Cow position: | |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-161 |
| Cow position: | |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-168 |
| Cow position: | |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 55-171 |
| Cow position: | |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 55-180 |
| Cow position: | |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 56-161 |
| Cow position: | |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-180 |
| Cow position: | |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.