Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-132
Cow position: chr8:45352036-45352163 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 44

Conread position: 1-146
Cow position: chr8:10194276-10194138 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-150
Cow position: chr8:4992759-4992618 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-155
Cow position: chr8:32243805-32243661 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 1-156
Cow position: chr8:25554618-25554765 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 1-157
Cow position: chr8:50024754-50024902 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1-158
Cow position: chr8:5385473-5385621 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr8:19474871-19475021 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr8:27731249-27731099 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr8:44449397-44449544 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 124, 30

Conread position: 1-161
Cow position: chr8:1651802-1651649 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr8:4897165-4897012 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr8:9815102-9814952 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 102, 34

Conread position: 1-161
Cow position: chr8:19785067-19784917 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 117, 33

Conread position: 1-161
Cow position: chr8:22274072-22273919 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr8:35827593-35827745 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr8:43052183-43052028 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 48

Conread position: 1-161
Cow position: chr8:49305539-49305691 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr8:50825524-50825371 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-161
Cow position: chr8:51443487-51443642 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 129, 49

Conread position: 1-161
Cow position: chr8:54306562-54306413 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr8:55885181-55885032 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 1-163
Cow position: chr8:19642676-19642525 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1-164
Cow position: chr8:26305654-26305810 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 48

Conread position: 1-165
Cow position: chr8:8323657-8323815 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 1-166
Cow position: chr8:3887540-3887386 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 1-166
Cow position: chr8:39357894-39358057 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 47

Conread position: 1-166
Cow position: chr8:40280896-40280736 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 84, 48

Conread position: 1-166
Cow position: chr8:47170154-47169998 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-166
Cow position: chr8:51501078-51501232 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr8:6416951-6417110 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr8:20105662-20105822 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-168
Cow position: chr8:46235915-46235747 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 50

Conread position: 1-171
Cow position: chr8:5665479-5665644 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 99, 48

Conread position: 1-171
Cow position: chr8:35816907-35817069 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 6, 49

Conread position: 1-172
Cow position: chr8:11003586-11003751 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 5, 46

Conread position: 1-172
Cow position: chr8:19378465-19378300 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 140, 48

Conread position: 1-173
Cow position: chr8:11124357-11124518 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr8:18870093-18869929 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr8:28382875-28383039 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 152, 41

Conread position: 1-173
Cow position: chr8:32332262-32332427 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr8:32620770-32620935 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 1-173
Cow position: chr8:37148522-37148358 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr8:37298687-37298525 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr8:37571494-37571656 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr8:38711796-38711641 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr8:38860779-38860609 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 48

Conread position: 1-173
Cow position: chr8:47057454-47057616 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 2-161
Cow position: chr8:18831954-18831802 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 3-159
Cow position: chr8:3057050-3056901 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 3-160
Cow position: chr8:52197249-52197397 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 3-161
Cow position: chr8:12105756-12105606 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 3-161
Cow position: chr8:16144340-16144189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr8:20783055-20783205 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 3-161
Cow position: chr8:24363430-24363580 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 3-161
Cow position: chr8:48182711-48182561 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 3-165
Cow position: chr8:36054373-36054217 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 3-166
Cow position: chr8:45167423-45167579 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 3-168
Cow position: chr8:17199223-17199380 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 3-168
Cow position: chr8:43942937-43942779 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 3-169
Cow position: chr8:42145559-42145723 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 87, 42

Conread position: 3-173
Cow position: chr8:20897555-20897393 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 3-174
Cow position: chr8:935913-935752 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 4-157
Cow position: chr8:13925839-13925692 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 98, 45

Conread position: 4-158
Cow position: chr8:39968075-39968220 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 4-160
Cow position: chr8:55725560-55725709 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 5-161
Cow position: chr8:3423211-3423063 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 8-146
Cow position: chr8:20109487-20109356 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 8-176
Cow position: chr8:676110-676271 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 93, 41

Conread position: 10-161
Cow position: chr8:36471531-36471380 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 15

Conread position: 10-168
Cow position: chr8:36912333-36912484 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 10-173
Cow position: chr8:13454423-13454576 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 11-153
Cow position: chr8:55096071-55095936 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 11-161
Cow position: chr8:12058924-12058783 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 11-161
Cow position: chr8:31767839-31767976 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 11-161
Cow position: chr8:49543080-49542941 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 11-161
Cow position: chr8:50282078-50281935 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 11-166
Cow position: chr8:26626070-26625922 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 11-168
Cow position: chr8:522226-522376 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 11-176
Cow position: chr8:8097066-8097222 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 11-178
Cow position: chr8:10832231-10832391 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 34

Conread position: 13-161
Cow position: chr8:45860008-45859867 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 13-168
Cow position: chr8:24406445-24406588 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 14-161
Cow position: chr8:6795583-6795439 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 91, 35

Conread position: 14-173
Cow position: chr8:1999828-1999677 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 15-174
Cow position: chr8:24488680-24488525 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 29

Conread position: 21-168
Cow position: chr8:40743026-40743168 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 81, 28

Conread position: 44-163
Cow position: chr8:34402471-34402352 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 50-161
Cow position: chr8:20307145-20307036 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 55-155
Cow position: chr8:24871719-24871819 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 55-161
Cow position: chr8:20582523-20582629 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 55-168
Cow position: chr8:20926464-20926579 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 55-171
Cow position: chr8:27033936-27033821 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 55-180
Cow position: chr8:38658299-38658423 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 56-161
Cow position: chr8:1297674-1297569 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 59-180
Cow position: chr8:38801328-38801211 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.