Cow genome map

Conread name: Ss1.1-Tra1-TCH01H070085.5

Conread position: 1-136
Cow position: chr9:48017936-48017808 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-148
Cow position: chr9:12495045-12495185 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-150
Cow position: chr9:29091601-29091743 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-158
Cow position: chr9:16826371-16826217 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 101, 34

Conread position: 1-158
Cow position: chr9:20355700-20355845 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 1-159
Cow position: chr9:36457827-36457978 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr9:13744103-13743950 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 48

Conread position: 1-160
Cow position: chr9:34196025-34196174 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 147, 26

Conread position: 1-160
Cow position: chr9:34276382-34276230 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-160
Cow position: chr9:34279228-34279073 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 116, 44

Conread position: 1-161
Cow position: chr9:1729856-1729693 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 1-161
Cow position: chr9:5068668-5068822 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 102, 48

Conread position: 1-161
Cow position: chr9:8645095-8645247 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 1-161
Cow position: chr9:11447976-11447827 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr9:12786645-12786492 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr9:17785739-17785585 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 49

Conread position: 1-161
Cow position: chr9:19657143-19656995 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1-161
Cow position: chr9:27279137-27279290 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-161
Cow position: chr9:27495062-27495218 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 50

Conread position: 1-161
Cow position: chr9:30194842-30194992 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 116, 48

Conread position: 1-161
Cow position: chr9:34760535-34760383 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr9:45711172-45711019 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-161
Cow position: chr9:47214720-47214564 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 12, 49

Conread position: 1-161
Cow position: chr9:51566667-51566514 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr9:52755021-52754869 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-161
Cow position: chr9:53323957-53323803 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 42

Conread position: 1-161
Cow position: chr9:61019534-61019381 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 1-163
Cow position: chr9:33114170-33114329 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 41

Conread position: 1-165
Cow position: chr9:54677088-54677249 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 44

Conread position: 1-166
Cow position: chr9:13169834-13169677 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 117, 41

Conread position: 1-166
Cow position: chr9:13670467-13670619 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr9:24887036-24887192 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr9:32052107-32052262 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-166
Cow position: chr9:36627953-36628104 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 1-166
Cow position: chr9:51620275-51620431 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-166
Cow position: chr9:61022450-61022609 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 43

Conread position: 1-168
Cow position: chr9:25583662-25583818 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 1-168
Cow position: chr9:32670115-32669959 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 1-168
Cow position: chr9:35028336-35028177 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-169
Cow position: chr9:9459820-9459973 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-172
Cow position: chr9:36410519-36410356 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr9:14738083-14738241 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-173
Cow position: chr9:28315255-28315421 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 48

Conread position: 1-173
Cow position: chr9:31344779-31344615 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 1-173
Cow position: chr9:34286629-34286791 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 1-173
Cow position: chr9:35403410-35403575 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 29

Conread position: 1-173
Cow position: chr9:40603498-40603660 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 1-173
Cow position: chr9:44396490-44396654 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 2-160
Cow position: chr9:8537138-8537288 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 2-160
Cow position: chr9:54598505-54598653 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 2-161
Cow position: chr9:17769153-17769299 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 2-173
Cow position: chr9:34423450-34423613 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 138
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 36, 0

Conread position: 2-174
Cow position: chr9:9091275-9091112 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 3-154
Cow position: chr9:26057596-26057456 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 3-161
Cow position: chr9:13993596-13993746 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 86, 44

Conread position: 3-161
Cow position: chr9:26394515-26394368 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 3-161
Cow position: chr9:41644920-41644769 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 3-174
Cow position: chr9:15215857-15215694 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 3-176
Cow position: chr9:55013508-55013337 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 81, 42

Conread position: 3-187
Cow position: chr9:42061926-42062105 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 46

Conread position: 3-188
Cow position: chr9:20828737-20828912 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 4-151
Cow position: chr9:3946312-3946177 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 4-161
Cow position: chr9:41282846-41282996 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 6-161
Cow position: chr9:5110692-5110839 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 9-173
Cow position: chr9:28342816-28342659 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 40

Conread position: 11-161
Cow position: chr9:9724038-9723895 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 11-161
Cow position: chr9:26102573-26102709 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 11-163
Cow position: chr9:26477053-26477199 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 31

Conread position: 11-170
Cow position: chr9:14357253-14357404 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 12-158
Cow position: chr9:50977414-50977275 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 13-172
Cow position: chr9:11200097-11199946 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 13-176
Cow position: chr9:30402586-30402430 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 108, 21

Conread position: 14-160
Cow position: chr9:31514091-31513952 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 15-168
Cow position: chr9:37951055-37950909 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 34-176
Cow position: chr9:25375880-25375741 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 46-159
Cow position: chr9:41964865-41964756 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 48

Conread position: 55-176
Cow position: chr9:9815288-9815408 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 55-181
Cow position: chr9:8467934-8468057 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 83, 0

Show alignments to all cow chromosomes.