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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1143-1500
               

               
Cow position:
               
chr1:51446121-51445743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
1146-1498
               

               
Cow position:
               
chr1:40600263-40599909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
1150-1493
               

               
Cow position:
               
chr1:45555595-45555235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
1152-1495
               

               
Cow position:
               
chr1:4414000-4414339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
1152-1500
               

               
Cow position:
               
chr1:31934734-31934375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
1154-1351
               

               
Cow position:
               
chr1:4329683-4329881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 9
               

               
Conread position:
               
1155-1382
               

               
Cow position:
               
chr1:93590364-93590599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 49
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr1:72304174-72304507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr1:86110516-86110867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
1156-1351
               

               
Cow position:
               
chr1:62469282-62469080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 5
               

               
Conread position:
               
1156-1355
               

               
Cow position:
               
chr1:98060283-98060076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
1156-1382
               

               
Cow position:
               
chr1:759188-759431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
1156-1402
               

               
Cow position:
               
chr1:85339601-85339351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
1156-1440
               

               
Cow position:
               
chr1:98583972-98583681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
1156-1454
               

               
Cow position:
               
chr1:82880852-82880554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
198, 22
               

               
Conread position:
               
1156-1492
               

               
Cow position:
               
chr1:81568804-81569159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr1:196781-197140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 282
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr1:75383190-75382859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
1157-1497
               

               
Cow position:
               
chr1:37309295-37309647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
23, 237
               

               
Conread position:
               
1157-1500
               

               
Cow position:
               
chr1:42545573-42545923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
1157-1500
               

               
Cow position:
               
chr1:101634926-101634568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
21, 104
               

               
Conread position:
               
1158-1369
               

               
Cow position:
               
chr1:71636105-71636325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 128
               

               
Conread position:
               
1158-1500
               

               
Cow position:
               
chr1:22192996-22192627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1159-1500
               

               
Cow position:
               
chr1:77462560-77462224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 19
               

               
Conread position:
               
1160-1392
               

               
Cow position:
               
chr1:52661955-52662195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
1160-1498
               

               
Cow position:
               
chr1:102785166-102784829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
1160-1500
               

               
Cow position:
               
chr1:64678899-64678565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
1161-1396
               

               
Cow position:
               
chr1:67654102-67654347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
1161-1453
               

               
Cow position:
               
chr1:53651195-53650921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr1:69678104-69678458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr1:82936384-82936722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
1162-1357
               

               
Cow position:
               
chr1:525025-524821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1162-1425
               

               
Cow position:
               
chr1:48206320-48206599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
1162-1490
               

               
Cow position:
               
chr1:41182056-41181719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 114
               

               
Conread position:
               
1162-1500
               

               
Cow position:
               
chr1:41047091-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
1163-1307
               

               
Cow position:
               
chr1:70175323-70175475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1163-1355
               

               
Cow position:
               
chr1:77810544-77810743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
1163-1374
               

               
Cow position:
               
chr1:101507568-101507355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
1163-1382
               

               
Cow position:
               
chr1:45315411-45315649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1163-1425
               

               
Cow position:
               
chr1:100852919-100852655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 8
               

               
Conread position:
               
1163-1458
               

               
Cow position:
               
chr1:102305929-102306238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 151
               

               
Conread position:
               
1163-1490
               

               
Cow position:
               
chr1:36998400-36998066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 50
               

               
Conread position:
               
1163-1495
               

               
Cow position:
               
chr1:89509713-89510053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
1163-1499
               

               
Cow position:
               
chr1:42887062-42887400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 230
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:7971623-7971285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 225
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:23968845-23969175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:42175945-42175588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 8
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:55230191-55229848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 264
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:61005339-61005698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 169
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr1:70538824-70538471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1164-1355
               

               
Cow position:
               
chr1:12595370-12595561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
139, 7
               

               
Conread position:
               
1164-1361
               

               
Cow position:
               
chr1:100538743-100538548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
1164-1450
               

               
Cow position:
               
chr1:49824846-49825156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1164-1494
               

               
Cow position:
               
chr1:89381493-89381144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
27, 274
               

               
Conread position:
               
1164-1495
               

               
Cow position:
               
chr1:79640072-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 274
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr1:70379948-70380282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
1165-1366
               

               
Cow position:
               
chr1:42775122-42774914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
1165-1499
               

               
Cow position:
               
chr1:61741748-61742103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
80, 40
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr1:69539901-69539561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
86, 147
               

               
Conread position:
               
1166-1499
               

               
Cow position:
               
chr1:98031128-98030783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
1168-1500
               

               
Cow position:
               
chr1:89449111-89448761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 269
               

               
Conread position:
               
1171-1331
               

               
Cow position:
               
chr1:51968737-51968576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
1171-1334
               

               
Cow position:
               
chr1:92363460-92363627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
71, 107
               

               
Conread position:
               
1171-1374
               

               
Cow position:
               
chr1:99604981-99605192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr1:41056890-41056547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr1:84910448-84910764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 72
               

               
Conread position:
               
1172-1500
               

               
Cow position:
               
chr1:12464456-12464802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 269
               

               
Conread position:
               
1172-1500
               

               
Cow position:
               
chr1:83072654-83072307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 272
               

               
Conread position:
               
1173-1341
               

               
Cow position:
               
chr1:73866988-73867152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr1:35162613-35162271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
73, 51
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr1:68817592-68817935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr1:101714325-101713985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 159
               

               
Conread position:
               
1174-1500
               

               
Cow position:
               
chr1:31272248-31272577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
1174-1500
               

               
Cow position:
               
chr1:82337573-82337917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 233
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr1:90595371-90595691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
74, 178
               

               
Conread position:
               
1176-1416
               

               
Cow position:
               
chr1:81481180-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1177-1355
               

               
Cow position:
               
chr1:85866339-85866174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1177-1496
               

               
Cow position:
               
chr1:33330898-33331217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr1:39224735-39225061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 74
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr1:73960890-73960569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 30
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr1:93110428-93110758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
1178-1302
               

               
Cow position:
               
chr1:45233186-45233059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
1178-1327
               

               
Cow position:
               
chr1:37470694-37470544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 141
               

               
Conread position:
               
1178-1328
               

               
Cow position:
               
chr1:53474351-53474198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
1178-1349
               

               
Cow position:
               
chr1:11708821-11708997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr1:43499107-43499279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr1:63461081-63460895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr1:70483132-70483319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1377
               

               
Cow position:
               
chr1:92590376-92590189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr1:45576123-45575914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 45
               

               
Conread position:
               
1178-1392
               

               
Cow position:
               
chr1:55753016-55753238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1416
               

               
Cow position:
               
chr1:3942013-3942265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
1178-1422
               

               
Cow position:
               
chr1:80584631-80584370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1433
               

               
Cow position:
               
chr1:97303050-97303316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 83
               

               
Conread position:
               
1178-1440
               

               
Cow position:
               
chr1:53452724-53452466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
179, 32
               

               
Conread position:
               
1178-1446
               

               
Cow position:
               
chr1:54267735-54268018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 135
               

               
Conread position:
               
1178-1464
               

               
Cow position:
               
chr1:82513149-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 262
               

               
Conread position:
               
1178-1469
               

               
Cow position:
               
chr1:61012509-61012204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
72, 255
               

               
Conread position:
               
1178-1483
               

               
Cow position:
               
chr1:89388546-89388224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 262
               

               
Conread position:
               
1178-1486
               

               
Cow position:
               
chr1:20104469-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1496
               

               
Cow position:
               
chr1:64572717-64572381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr1:72011619-72011943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
72, 207
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr1:85029139-85028825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 63
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr1:62964471-62964144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr1:55705044-55705385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:1956135-1956464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 119
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:5597009-5597334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 184
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:16855498-16855827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
67, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:19481897-19482211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
176, 32
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:20000553-20000887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:24542367-24542718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
68, 269
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:25383872-25383526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 199
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:41697257-41696922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 157
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:42873774-42874083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
176, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:43505727-43505388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:54478519-54478188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
174, 73
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:56225669-56225330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:59519114-59518784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:61564984-61564660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:61885115-61884783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
71, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:68863222-68862897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
82, 71
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:70435189-70434867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
179, 89
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:75745063-75744724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:78857123-78857457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 239
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:81290707-81290371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 157
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:84811738-84812069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
67, 261
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:88913523-88913182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 149
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:90621303-90621647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 260
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:91023265-91023604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
71, 32
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr1:93499822-93499490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
63, 105
               

               
Conread position:
               
1179-1377
               

               
Cow position:
               
chr1:527881-528079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
1179-1389
               

               
Cow position:
               
chr1:97833899-97833692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
1179-1474
               

               
Cow position:
               
chr1:27463330-27463021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 41
               

               
Conread position:
               
1179-1494
               

               
Cow position:
               
chr1:10633242-10632918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr1:21787526-21787194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr1:29935189-29935514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
1180-1334
               

               
Cow position:
               
chr1:84787461-84787306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
1180-1348
               

               
Cow position:
               
chr1:79663252-79663416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1180-1354
               

               
Cow position:
               
chr1:55685777-55685962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1180-1376
               

               
Cow position:
               
chr1:33998950-33998752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
1180-1378
               

               
Cow position:
               
chr1:68688780-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1180-1382
               

               
Cow position:
               
chr1:27959346-27959563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 163
               

               
Conread position:
               
1180-1386
               

               
Cow position:
               
chr1:43286530-43286328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
174, 24
               

               
Conread position:
               
1180-1387
               

               
Cow position:
               
chr1:85772205-85771991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr1:24530699-24530482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 193
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr1:41027273-41027055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr1:78066342-78066556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
69, 205
               

               
Conread position:
               
1180-1422
               

               
Cow position:
               
chr1:48618046-48618300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 203
               

               
Conread position:
               
1180-1439
               

               
Cow position:
               
chr1:35671737-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
1180-1454
               

               
Cow position:
               
chr1:52467486-52467214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 27
               

               
Conread position:
               
1180-1463
               

               
Cow position:
               
chr1:39426816-39427101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
63, 89
               

               
Conread position:
               
1180-1476
               

               
Cow position:
               
chr1:41137947-41138244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
69, 207
               

               
Conread position:
               
1180-1481
               

               
Cow position:
               
chr1:56618455-56618768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
1180-1483
               

               
Cow position:
               
chr1:52052532-52052839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
1180-1493
               

               
Cow position:
               
chr1:71295103-71295438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr1:10778755-10778433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr1:19466237-19465924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
174, 41
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr1:78838988-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 163
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr1:54206618-54206953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 160
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr1:78811239-78810905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
70, 199
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr1:20667549-20667877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:3923603-3923931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 239
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:14379349-14379671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 167
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:14980937-14981257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
180, 64
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:22526075-22525742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 284
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:22729255-22728915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:37321809-37322138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 147
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:41115535-41115851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
184, 30
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:44507169-44506831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 260
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:46030163-46030493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 253
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:46218751-46218445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
208, 66
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:57575563-57575895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 244
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:61391595-61391925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:74955831-74956158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 156
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:86682367-86682699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:91065956-91066289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:97954282-97954595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 77
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr1:101860286-101860625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 159
               

               
Conread position:
               
1181-1465
               

               
Cow position:
               
chr1:42541791-42541495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
1181-1494
               

               
Cow position:
               
chr1:96472615-96472315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 58
               

               
Conread position:
               
1181-1498
               

               
Cow position:
               
chr1:68855366-68855036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 231
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr1:8818-8485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 225
               

               
Conread position:
               
1182-1457
               

               
Cow position:
               
chr1:90904558-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
68, 209
               

               
Conread position:
               
1182-1489
               

               
Cow position:
               
chr1:56477784-56477465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 303
               

               
Conread position:
               
1182-1494
               

               
Cow position:
               
chr1:24581766-24581453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
1182-1499
               

               
Cow position:
               
chr1:64302051-64302383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr1:93528893-93528558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 163
               

               
Conread position:
               
1184-1376
               

               
Cow position:
               
chr1:66752435-66752636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1184-1500
               

               
Cow position:
               
chr1:95177115-95176803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
175, 53
               

               
Conread position:
               
1186-1376
               

               
Cow position:
               
chr1:61011370-61011174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1187-1499
               

               
Cow position:
               
chr1:100762268-100761944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
62, 163
               

               
Conread position:
               
1188-1378
               

               
Cow position:
               
chr1:62034642-62034837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
1188-1393
               

               
Cow position:
               
chr1:64113607-64113815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1188-1489
               

               
Cow position:
               
chr1:58754605-58754920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
66, 44
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr1:77720067-77720371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1191-1389
               

               
Cow position:
               
chr1:83024975-83025184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1191-1487
               

               
Cow position:
               
chr1:43388864-43389173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 143
               

               
Conread position:
               
1191-1496
               

               
Cow position:
               
chr1:17196435-17196761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 254
               

               
Conread position:
               
1191-1499
               

               
Cow position:
               
chr1:8128789-8129102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
1191-1499
               

               
Cow position:
               
chr1:97090507-97090192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 9
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr1:95499306-95499628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 247
               

               
Conread position:
               
1192-1496
               

               
Cow position:
               
chr1:68845317-68845618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
143, 57
               

               
Conread position:
               
1192-1496
               

               
Cow position:
               
chr1:78097115-78096804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 270
               

               
Conread position:
               
1193-1388
               

               
Cow position:
               
chr1:89157942-89158143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 196
               

               
Conread position:
               
1197-1500
               

               
Cow position:
               
chr1:71078778-71079092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 235
               

               
Conread position:
               
1201-1475
               

               
Cow position:
               
chr1:65028701-65028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
1201-1500
               

               
Cow position:
               
chr1:22827326-22827031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 48
               

               
Conread position:
               
1205-1500
               

               
Cow position:
               
chr1:13637489-13637809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 231
               

               
Conread position:
               
1205-1500
               

               
Cow position:
               
chr1:53398149-53397855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
1211-1490
               

               
Cow position:
               
chr1:100800509-100800230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
1214-1498
               

               
Cow position:
               
chr1:97611497-97611787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 185
               

               
Conread position:
               
1215-1497
               

               
Cow position:
               
chr1:6078045-6077765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
1225-1493
               

               
Cow position:
               
chr1:93810576-93810300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 202
               

               
Conread position:
               
1231-1500
               

               
Cow position:
               
chr1:93044156-93043893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 115
               

               
Conread position:
               
1233-1500
               

               
Cow position:
               
chr1:83582797-83583070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
1235-1496
               

               
Cow position:
               
chr1:71253421-71253685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
122, 90
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr1:72068699-72068975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr1:90975952-90976223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
1242-1427
               

               
Cow position:
               
chr1:3965961-3965774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
1242-1474
               

               
Cow position:
               
chr1:67688455-67688691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
112, 73
               

               
Conread position:
               
1242-1475
               

               
Cow position:
               
chr1:84255895-84255652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
115, 187
               

               
Conread position:
               
1242-1476
               

               
Cow position:
               
chr1:10716624-10716390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
110, 81
               

               
Conread position:
               
1242-1476
               

               
Cow position:
               
chr1:45553115-45553356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
1242-1478
               

               
Cow position:
               
chr1:98512054-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 37
               

               
Conread position:
               
1242-1488
               

               
Cow position:
               
chr1:3789942-3790190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
1242-1493
               

               
Cow position:
               
chr1:74822579-74822326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 189
               

               
Conread position:
               
1242-1498
               

               
Cow position:
               
chr1:53671622-53671873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
56, 63
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr1:3882331-3882600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr1:11729303-11729046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
108, 150
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr1:47233350-47233614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 184
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:5135581-5135830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:50930851-50931112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 83
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:51968590-51968325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 185
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:52039764-52039500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:52912770-52913011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:57900596-57900875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 208
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:87197948-87197691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 158
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr1:98551847-98551580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
1243-1499
               

               
Cow position:
               
chr1:49433137-49433397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
112, 140
               

               
Conread position:
               
1243-1499
               

               
Cow position:
               
chr1:93554963-93554708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 184
               

               
Conread position:
               
1244-1498
               

               
Cow position:
               
chr1:48105310-48105568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
140, 60
               

               
Conread position:
               
1244-1500
               

               
Cow position:
               
chr1:96276925-96277191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
1246-1376
               

               
Cow position:
               
chr1:97750495-97750626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr1:81913031-81913284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
113, 57
               

               
Conread position:
               
1248-1399
               

               
Cow position:
               
chr1:79146697-79146848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
1248-1499
               

               
Cow position:
               
chr1:53458817-53458561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
1248-1500
               

               
Cow position:
               
chr1:82884275-82884526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
1249-1355
               

               
Cow position:
               
chr1:84288524-84288418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1249-1397
               

               
Cow position:
               
chr1:81580298-81580152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
1249-1454
               

               
Cow position:
               
chr1:80841767-80841562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 179
               

               
Conread position:
               
1249-1464
               

               
Cow position:
               
chr1:51044188-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
1249-1486
               

               
Cow position:
               
chr1:80422394-80422154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
1249-1490
               

               
Cow position:
               
chr1:101280617-101280842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1249-1496
               

               
Cow position:
               
chr1:89341859-89342127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
91, 191
               

               
Conread position:
               
1249-1499
               

               
Cow position:
               
chr1:39068835-39069090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 167
               

               
Conread position:
               
1249-1499
               

               
Cow position:
               
chr1:91874796-91875043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr1:49796113-49795870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 71
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr1:52995147-52994891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 186
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr1:81613510-81613253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1250-1422
               

               
Cow position:
               
chr1:36578637-36578468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1251-1454
               

               
Cow position:
               
chr1:4581211-4581417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
106, 177
               

               
Conread position:
               
1251-1500
               

               
Cow position:
               
chr1:80311559-80311334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1252-1357
               

               
Cow position:
               
chr1:50329610-50329508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1252-1363
               

               
Cow position:
               
chr1:71945966-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1382
               

               
Cow position:
               
chr1:95072450-95072319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1252-1388
               

               
Cow position:
               
chr1:48214040-48214173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
1252-1389
               

               
Cow position:
               
chr1:42537204-42537343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
1252-1422
               

               
Cow position:
               
chr1:31855129-31855296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 139
               

               
Conread position:
               
1252-1440
               

               
Cow position:
               
chr1:62036920-62036727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 153
               

               
Conread position:
               
1252-1441
               

               
Cow position:
               
chr1:77232460-77232651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 167
               

               
Conread position:
               
1252-1455
               

               
Cow position:
               
chr1:50992051-50991843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
105, 165
               

               
Conread position:
               
1252-1466
               

               
Cow position:
               
chr1:81477750-81477972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 197
               

               
Conread position:
               
1252-1481
               

               
Cow position:
               
chr1:7023239-7023003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1497
               

               
Cow position:
               
chr1:85549960-85550211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 174
               

               
Conread position:
               
1252-1497
               

               
Cow position:
               
chr1:89350083-89349829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 176
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:18780211-18780470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
96, 186
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:34771385-34771640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:68253713-68253455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
30, 172
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:68763570-68763818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 67
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:69264926-69264679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
219, 105
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:79844583-79844330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
105, 224
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:88652754-88652494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr1:92369852-92369596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
99, 30
               

               
Conread position:
               
1253-1474
               

               
Cow position:
               
chr1:48769919-48769694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 128
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr1:101632220-101632475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 178
               

               
Conread position:
               
1254-1476
               

               
Cow position:
               
chr1:68845053-68845269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
103, 126
               

               
Conread position:
               
1257-1496
               

               
Cow position:
               
chr1:92197566-92197332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
180, 74
               

               
Conread position:
               
1258-1396
               

               
Cow position:
               
chr1:30136242-30136379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1258-1499
               

               
Cow position:
               
chr1:38401911-38401659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr1:67821111-67821346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 136
               

               
Conread position:
               
1259-1500
               

               
Cow position:
               
chr1:89230119-89230364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
1261-1499
               

               
Cow position:
               
chr1:81868620-81868861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr1:36932263-36932021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 170
               

               
Conread position:
               
1262-1466
               

               
Cow position:
               
chr1:19226949-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
95, 159
               

               
Conread position:
               
1263-1376
               

               
Cow position:
               
chr1:31599032-31598918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1263-1381
               

               
Cow position:
               
chr1:86912547-86912428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1263-1387
               

               
Cow position:
               
chr1:44125531-44125653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
1263-1389
               

               
Cow position:
               
chr1:83618497-83618628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
1263-1392
               

               
Cow position:
               
chr1:99793654-99793529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
1263-1465
               

               
Cow position:
               
chr1:6752124-6752329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 164
               

               
Conread position:
               
1263-1480
               

               
Cow position:
               
chr1:80900226-80900001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
1263-1495
               

               
Cow position:
               
chr1:23998829-23999051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
1263-1495
               

               
Cow position:
               
chr1:39509951-39510180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 159
               

               
Conread position:
               
1263-1498
               

               
Cow position:
               
chr1:3166969-3167203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 58
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:7350654-7350406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:12978789-12978544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
96, 173
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:20205134-20204891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:27380563-27380338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:30047496-30047730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:64250946-64251188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:77683459-77683221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:85162440-85162680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
94, 155
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:85647675-85647918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr1:95215083-95215318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
94, 120
               

               
Conread position:
               
1264-1499
               

               
Cow position:
               
chr1:100393057-100393296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 165
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr1:65909617-65909390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
205, 91
               

               
Conread position:
               
1265-1497
               

               
Cow position:
               
chr1:85774562-85774327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 168
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr1:45288766-45289008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 168
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr1:62291596-62291827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
1267-1381
               

               
Cow position:
               
chr1:83066944-83067059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1269-1499
               

               
Cow position:
               
chr1:20384522-20384755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
1272-1389
               

               
Cow position:
               
chr1:40935669-40935787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1272-1500
               

               
Cow position:
               
chr1:91800500-91800738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
1276-1500
               

               
Cow position:
               
chr1:43703503-43703271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1276-1500
               

               
Cow position:
               
chr1:87212027-87211809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
83, 116
               

               
Conread position:
               
1277-1500
               

               
Cow position:
               
chr1:51531844-51531629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 59
               

               
Conread position:
               
1277-1500
               

               
Cow position:
               
chr1:90868348-90868575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
80, 152
               

               
Conread position:
               
1278-1498
               

               
Cow position:
               
chr1:5023670-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
81, 151
               

               
Conread position:
               
1279-1499
               

               
Cow position:
               
chr1:70026254-70026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 154
               

               
Conread position:
               
1282-1495
               

               
Cow position:
               
chr1:68951713-68951496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
1282-1497
               

               
Cow position:
               
chr1:101946626-101946843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
1288-1500
               

               
Cow position:
               
chr1:31413890-31414097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 95
               

               
Conread position:
               
1291-1500
               

               
Cow position:
               
chr1:6788204-6788422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 138
               

               
Conread position:
               
1292-1500
               

               
Cow position:
               
chr1:55135914-55135697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 146
               

               
Conread position:
               
1293-1500
               

               
Cow position:
               
chr1:87440544-87440332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
1296-1488
               

               
Cow position:
               
chr1:91369935-91370131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
81, 129
               

               
Conread position:
               
1312-1500
               

               
Cow position:
               
chr1:44155308-44155113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1313-1498
               

               
Cow position:
               
chr1:89508606-89508422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
1314-1499
               

               
Cow position:
               
chr1:99136374-99136566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
1326-1500
               

               
Cow position:
               
chr1:99039311-99039489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
1381-1500
               

               
Cow position:
               
chr1:12595922-12596040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 46
               
Show alignments to all cow chromosomes.