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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1140-1499
               

               
Cow position:
               
chr11:55053089-55052727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
1150-1378
               

               
Cow position:
               
chr11:30894793-30895036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1156-1319
               

               
Cow position:
               
chr11:65564937-65565099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
1156-1389
               

               
Cow position:
               
chr11:18915212-18914982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
201, 15
               

               
Conread position:
               
1156-1389
               

               
Cow position:
               
chr11:30172503-30172266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 188
               

               
Conread position:
               
1156-1454
               

               
Cow position:
               
chr11:39060399-39060715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr11:34121402-34121040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr11:62620579-62620223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 288
               

               
Conread position:
               
1158-1333
               

               
Cow position:
               
chr11:25721802-25721981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
1158-1457
               

               
Cow position:
               
chr11:63998889-63999207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
92, 212
               

               
Conread position:
               
1158-1496
               

               
Cow position:
               
chr11:2917390-2917742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
1158-1499
               

               
Cow position:
               
chr11:71390373-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 144
               

               
Conread position:
               
1158-1500
               

               
Cow position:
               
chr11:62490623-62490273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
1158-1500
               

               
Cow position:
               
chr11:74316907-74316552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 253
               

               
Conread position:
               
1160-1479
               

               
Cow position:
               
chr11:69978164-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
1161-1335
               

               
Cow position:
               
chr11:4621236-4621419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1161-1373
               

               
Cow position:
               
chr11:20205660-20205879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1161-1480
               

               
Cow position:
               
chr11:81134970-81135305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 232
               

               
Conread position:
               
1161-1492
               

               
Cow position:
               
chr11:62663045-62663373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
1161-1497
               

               
Cow position:
               
chr11:39115672-39115336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
1161-1497
               

               
Cow position:
               
chr11:80819825-80820156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr11:30355245-30354909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr11:80923123-80923484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 179
               

               
Conread position:
               
1162-1492
               

               
Cow position:
               
chr11:37424950-37425283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
1162-1496
               

               
Cow position:
               
chr11:14470556-14470213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
1162-1500
               

               
Cow position:
               
chr11:48544632-48544276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
1163-1355
               

               
Cow position:
               
chr11:56115133-56114930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1163-1374
               

               
Cow position:
               
chr11:30842830-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
1163-1387
               

               
Cow position:
               
chr11:48086114-48085877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1163-1496
               

               
Cow position:
               
chr11:2925112-2925444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 61
               

               
Conread position:
               
1163-1499
               

               
Cow position:
               
chr11:18699068-18698718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1164-1389
               

               
Cow position:
               
chr11:82740689-82740466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
1164-1497
               

               
Cow position:
               
chr11:55494859-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 49
               

               
Conread position:
               
1165-1337
               

               
Cow position:
               
chr11:13684528-13684701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
1165-1486
               

               
Cow position:
               
chr11:23407654-23407315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
85, 272
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr11:19500609-19500940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
16, 188
               

               
Conread position:
               
1166-1382
               

               
Cow position:
               
chr11:62812758-62812986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
1166-1389
               

               
Cow position:
               
chr11:80639359-80639593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
1166-1425
               

               
Cow position:
               
chr11:33409073-33409348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
1171-1331
               

               
Cow position:
               
chr11:53486972-53487138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
1171-1353
               

               
Cow position:
               
chr11:67948569-67948748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1171-1479
               

               
Cow position:
               
chr11:67615064-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
1172-1500
               

               
Cow position:
               
chr11:38236432-38236083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 188
               

               
Conread position:
               
1173-1398
               

               
Cow position:
               
chr11:21886016-21885783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
1175-1355
               

               
Cow position:
               
chr11:9699071-9699253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1175-1387
               

               
Cow position:
               
chr11:42159878-42160095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr11:45646413-45646755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
1176-1382
               

               
Cow position:
               
chr11:38211824-38211609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
1177-1497
               

               
Cow position:
               
chr11:17227469-17227803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
65, 162
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr11:64048572-64048258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
1178-1313
               

               
Cow position:
               
chr11:57170429-57170565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1178-1324
               

               
Cow position:
               
chr11:81928331-81928485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 110
               

               
Conread position:
               
1178-1335
               

               
Cow position:
               
chr11:4411692-4411857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
1178-1335
               

               
Cow position:
               
chr11:62483793-62483950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1178-1347
               

               
Cow position:
               
chr11:38194358-38194191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
146, 68
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr11:25320345-25320179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr11:48900678-48900851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr11:15607808-15607980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr11:30986817-30986633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr11:48315218-48315405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr11:63478543-63478369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
1178-1380
               

               
Cow position:
               
chr11:46922706-46922920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1382
               

               
Cow position:
               
chr11:25119755-25119967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1178-1386
               

               
Cow position:
               
chr11:18447320-18447533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr11:64105174-64104956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 161
               

               
Conread position:
               
1178-1420
               

               
Cow position:
               
chr11:63866480-63866737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1422
               

               
Cow position:
               
chr11:17676194-17676455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1449
               

               
Cow position:
               
chr11:30494169-30493889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
1178-1454
               

               
Cow position:
               
chr11:29960473-29960181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
1178-1465
               

               
Cow position:
               
chr11:49872706-49873013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 160
               

               
Conread position:
               
1178-1465
               

               
Cow position:
               
chr11:83032858-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 223
               

               
Conread position:
               
1178-1467
               

               
Cow position:
               
chr11:67614744-67615056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1178-1475
               

               
Cow position:
               
chr11:62789308-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 258
               

               
Conread position:
               
1178-1486
               

               
Cow position:
               
chr11:33824733-33825037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
1178-1486
               

               
Cow position:
               
chr11:49057564-49057256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
72, 149
               

               
Conread position:
               
1178-1490
               

               
Cow position:
               
chr11:41985867-41986195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 257
               

               
Conread position:
               
1178-1490
               

               
Cow position:
               
chr11:44032187-44031852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr11:36182872-36182529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr11:67600959-67600625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
66, 260
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr11:42359274-42358961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr11:64335011-64334699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr11:258992-259332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
24, 265
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:41351-41023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
54, 274
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:9270557-9270888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:11558349-11558007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:13040007-13040320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 19
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:15339236-15338914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:27747099-27746764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:30192359-30192012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:30830442-30830776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:35580442-35580097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
72, 263
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:47899431-47899119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 68
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:48296206-48295872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:62239922-62239586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
72, 59
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:64044398-64044081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:65762404-65762760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr11:75874591-75874912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
1179-1371
               

               
Cow position:
               
chr11:46784643-46784449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
70, 82
               

               
Conread position:
               
1179-1389
               

               
Cow position:
               
chr11:30867357-30867140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1179-1495
               

               
Cow position:
               
chr11:35212991-35213316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr11:20238856-20238511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr11:39462799-39462460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1180-1332
               

               
Cow position:
               
chr11:15591301-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1180-1347
               

               
Cow position:
               
chr11:58186051-58185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr11:51195918-51196091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1180-1365
               

               
Cow position:
               
chr11:63165472-63165666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1180-1366
               

               
Cow position:
               
chr11:84764196-84764016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
1180-1376
               

               
Cow position:
               
chr11:41603522-41603716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr11:17721622-17721845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1180-1395
               

               
Cow position:
               
chr11:897843-897623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
1180-1422
               

               
Cow position:
               
chr11:8437511-8437774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
1180-1450
               

               
Cow position:
               
chr11:31228132-31227858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
1180-1461
               

               
Cow position:
               
chr11:63919888-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
1180-1492
               

               
Cow position:
               
chr11:71805987-71806296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 78
               

               
Conread position:
               
1180-1496
               

               
Cow position:
               
chr11:44223060-44222734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr11:51729453-51729131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 209
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr11:83043188-83043522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 254
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr11:3175847-3175531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr11:21843960-21844292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
64, 123
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr11:41272297-41271982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
216, 63
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr11:52297044-52297380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 198
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:12111297-12111626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:16342069-16342400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
177, 56
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:18484022-18484325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:21728110-21728429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:27404892-27405226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
66, 134
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:33348020-33348346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 46
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:35153641-35153985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:35882070-35881750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:36647506-36647203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:40818454-40818800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:42083632-42083317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:50152634-50152976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
64, 261
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr11:80556397-80556060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
1181-1497
               

               
Cow position:
               
chr11:21852138-21852461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
176, 68
               

               
Conread position:
               
1181-1497
               

               
Cow position:
               
chr11:63433888-63434213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
1181-1499
               

               
Cow position:
               
chr11:45631602-45631921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
184, 65
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr11:27248666-27248332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr11:65607513-65607851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 270
               

               
Conread position:
               
1182-1376
               

               
Cow position:
               
chr11:43360610-43360807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
1182-1389
               

               
Cow position:
               
chr11:4636998-4637215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1182-1473
               

               
Cow position:
               
chr11:17036355-17036662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 253
               

               
Conread position:
               
1182-1497
               

               
Cow position:
               
chr11:18572960-18572644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
1182-1498
               

               
Cow position:
               
chr11:13061077-13061388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
175, 48
               

               
Conread position:
               
1182-1498
               

               
Cow position:
               
chr11:17083136-17083456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
18, 213
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr11:55762033-55761719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr11:69811059-69810746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
1183-1500
               

               
Cow position:
               
chr11:58588503-58588187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
176, 38
               

               
Conread position:
               
1184-1344
               

               
Cow position:
               
chr11:80296684-80296850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
1184-1355
               

               
Cow position:
               
chr11:22884581-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
1184-1382
               

               
Cow position:
               
chr11:16801803-16801988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1184-1496
               

               
Cow position:
               
chr11:38639274-38638964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
173, 179
               

               
Conread position:
               
1184-1500
               

               
Cow position:
               
chr11:17661238-17660934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
200, 26
               

               
Conread position:
               
1188-1497
               

               
Cow position:
               
chr11:28993577-28993889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
74, 106
               

               
Conread position:
               
1188-1498
               

               
Cow position:
               
chr11:8524947-8525269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
75, 136
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr11:42296456-42296778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr11:73353896-73354215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 246
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr11:77319583-77319252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 247
               

               
Conread position:
               
1189-1497
               

               
Cow position:
               
chr11:39499527-39499201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
1190-1499
               

               
Cow position:
               
chr11:24602130-24601814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 219
               

               
Conread position:
               
1191-1490
               

               
Cow position:
               
chr11:18852071-18851768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 121
               

               
Conread position:
               
1195-1497
               

               
Cow position:
               
chr11:81162282-81162590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
1198-1495
               

               
Cow position:
               
chr11:10992423-10992126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
52, 157
               

               
Conread position:
               
1199-1500
               

               
Cow position:
               
chr11:11469493-11469795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 196
               

               
Conread position:
               
1202-1355
               

               
Cow position:
               
chr11:905237-905391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 21
               

               
Conread position:
               
1202-1396
               

               
Cow position:
               
chr11:24599238-24599437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
1202-1500
               

               
Cow position:
               
chr11:2907374-2907679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
1205-1499
               

               
Cow position:
               
chr11:10213431-10213721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
1207-1378
               

               
Cow position:
               
chr11:31410728-31410910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1207-1475
               

               
Cow position:
               
chr11:80537624-80537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 56
               

               
Conread position:
               
1208-1500
               

               
Cow position:
               
chr11:3393063-3393369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 104
               

               
Conread position:
               
1209-1500
               

               
Cow position:
               
chr11:65409021-65409315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
1211-1492
               

               
Cow position:
               
chr11:47772256-47772544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
1214-1499
               

               
Cow position:
               
chr11:67804890-67804592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
28, 227
               

               
Conread position:
               
1218-1500
               

               
Cow position:
               
chr11:44636624-44636918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 217
               

               
Conread position:
               
1227-1396
               

               
Cow position:
               
chr11:53279595-53279762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
130, 98
               

               
Conread position:
               
1235-1499
               

               
Cow position:
               
chr11:71492750-71493017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 102
               

               
Conread position:
               
1238-1497
               

               
Cow position:
               
chr11:43898247-43897983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 111
               

               
Conread position:
               
1241-1500
               

               
Cow position:
               
chr11:9221626-9221884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 139
               

               
Conread position:
               
1242-1382
               

               
Cow position:
               
chr11:48248109-48248252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1242-1451
               

               
Cow position:
               
chr11:26845490-26845706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
1242-1463
               

               
Cow position:
               
chr11:54334433-54334210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
113, 188
               

               
Conread position:
               
1242-1466
               

               
Cow position:
               
chr11:41293713-41293945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1242-1480
               

               
Cow position:
               
chr11:44575648-44575875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
1242-1489
               

               
Cow position:
               
chr11:28644192-28643935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
112, 187
               

               
Conread position:
               
1242-1498
               

               
Cow position:
               
chr11:1070986-1071250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
112, 190
               

               
Conread position:
               
1242-1498
               

               
Cow position:
               
chr11:83066592-83066336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 142
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr11:2092432-2092180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr11:34646694-34646432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
115, 208
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr11:63909562-63909817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:952371-952111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:11125767-11125502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:18508926-18509179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
113, 148
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:30955105-30954838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
112, 185
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:48474808-48474542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 188
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr11:60470094-60470339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
1244-1443
               

               
Cow position:
               
chr11:32690868-32691067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
110, 143
               

               
Conread position:
               
1246-1377
               

               
Cow position:
               
chr11:34413239-34413371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1246-1466
               

               
Cow position:
               
chr11:65767301-65767071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 183
               

               
Conread position:
               
1246-1476
               

               
Cow position:
               
chr11:261167-261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
111, 179
               

               
Conread position:
               
1246-1484
               

               
Cow position:
               
chr11:69076011-69075764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 102
               

               
Conread position:
               
1246-1497
               

               
Cow position:
               
chr11:62150793-62151042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr11:20761943-20761686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
1247-1500
               

               
Cow position:
               
chr11:7590288-7590033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
1249-1365
               

               
Cow position:
               
chr11:71022100-71021981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1249-1389
               

               
Cow position:
               
chr11:15382405-15382546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1249-1389
               

               
Cow position:
               
chr11:19606675-19606534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1249-1497
               

               
Cow position:
               
chr11:13075714-13075948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
146, 66
               

               
Conread position:
               
1249-1497
               

               
Cow position:
               
chr11:23128442-23128700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
108, 180
               

               
Conread position:
               
1249-1498
               

               
Cow position:
               
chr11:6202541-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 112
               

               
Conread position:
               
1249-1498
               

               
Cow position:
               
chr11:76114740-76114496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 42
               

               
Conread position:
               
1249-1499
               

               
Cow position:
               
chr11:36238875-36238624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 77
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:3234173-3233923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 139
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:16906953-16907203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:17278578-17278826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 87
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:23586736-23586477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:34113363-34113105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 185
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:35684403-35684655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
108, 171
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:47545228-47544970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 24
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:52380774-52381034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 184
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr11:83230303-83230551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
108, 100
               

               
Conread position:
               
1250-1500
               

               
Cow position:
               
chr11:44234452-44234193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 218
               

               
Conread position:
               
1251-1496
               

               
Cow position:
               
chr11:25387164-25386907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 196
               

               
Conread position:
               
1251-1499
               

               
Cow position:
               
chr11:82940528-82940781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
1251-1500
               

               
Cow position:
               
chr11:67747376-67747124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
1252-1382
               

               
Cow position:
               
chr11:3248612-3248745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 78
               

               
Conread position:
               
1252-1397
               

               
Cow position:
               
chr11:36328940-36329087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1464
               

               
Cow position:
               
chr11:6194301-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1252-1465
               

               
Cow position:
               
chr11:64867926-64868140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
98, 157
               

               
Conread position:
               
1252-1488
               

               
Cow position:
               
chr11:46953042-46952806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 198
               

               
Conread position:
               
1252-1495
               

               
Cow position:
               
chr11:5201558-5201805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
1252-1498
               

               
Cow position:
               
chr11:69119388-69119144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 176
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr11:2575809-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr11:48650067-48649820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 157
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:377547-377806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
103, 180
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:8147804-8148057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 134
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:40478758-40479015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 175
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:48272295-48272037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 181
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:56518217-56518470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:59702585-59702326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 189
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:59873023-59872771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:61958650-61958907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:73512349-73512592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr11:73924467-73924720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
1253-1388
               

               
Cow position:
               
chr11:72292646-72292508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1253-1399
               

               
Cow position:
               
chr11:64406322-64406175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1253-1474
               

               
Cow position:
               
chr11:40608501-40608730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
1253-1498
               

               
Cow position:
               
chr11:50778461-50778215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 115
               

               
Conread position:
               
1254-1383
               

               
Cow position:
               
chr11:3790935-3790799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1254-1389
               

               
Cow position:
               
chr11:31352459-31352595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1254-1488
               

               
Cow position:
               
chr11:67246878-67246644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 65
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr11:11232363-11232615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
1257-1497
               

               
Cow position:
               
chr11:48496503-48496744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
89, 181
               

               
Conread position:
               
1257-1500
               

               
Cow position:
               
chr11:44642202-44642447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
1258-1355
               

               
Cow position:
               
chr11:34238482-34238579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1258-1378
               

               
Cow position:
               
chr11:10363298-10363418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
1258-1397
               

               
Cow position:
               
chr11:28168334-28168474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1258-1497
               

               
Cow position:
               
chr11:46580442-46580198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
101, 22
               

               
Conread position:
               
1258-1499
               

               
Cow position:
               
chr11:33341056-33341305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 228
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr11:1849087-1849322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr11:35873914-35874152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 150
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr11:44036808-44036558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
126, 66
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr11:45435169-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
91, 135
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr11:65157319-65157572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1259-1500
               

               
Cow position:
               
chr11:62226074-62225826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1261-1457
               

               
Cow position:
               
chr11:84490413-84490607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
8, 81
               

               
Conread position:
               
1261-1497
               

               
Cow position:
               
chr11:50073023-50072793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 122
               

               
Conread position:
               
1261-1498
               

               
Cow position:
               
chr11:52983761-52983517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 169
               

               
Conread position:
               
1263-1382
               

               
Cow position:
               
chr11:16842903-16843020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
1263-1382
               

               
Cow position:
               
chr11:35803220-35803099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
1263-1395
               

               
Cow position:
               
chr11:30484003-30483870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1263-1489
               

               
Cow position:
               
chr11:86720335-86720561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
1263-1497
               

               
Cow position:
               
chr11:17321734-17321503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:5547-5307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
94, 160
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:8428595-8428336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 162
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:21438292-21438055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
96, 165
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:35363565-35363337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
206, 92
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:64090013-64090244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 125
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr11:70620128-70619892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 166
               

               
Conread position:
               
1266-1500
               

               
Cow position:
               
chr11:30911923-30912150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 38
               

               
Conread position:
               
1276-1484
               

               
Cow position:
               
chr11:69392633-69392412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
1276-1498
               

               
Cow position:
               
chr11:82796218-82796444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
78, 153
               

               
Conread position:
               
1276-1500
               

               
Cow position:
               
chr11:45897979-45898213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1278-1500
               

               
Cow position:
               
chr11:10620259-10620483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
1278-1500
               

               
Cow position:
               
chr11:67550309-67550533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
1279-1419
               

               
Cow position:
               
chr11:36914659-36914802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1282-1420
               

               
Cow position:
               
chr11:54218779-54218634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1282-1500
               

               
Cow position:
               
chr11:18591369-18591592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
1284-1500
               

               
Cow position:
               
chr11:24937728-24937504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 144
               

               
Conread position:
               
1291-1471
               

               
Cow position:
               
chr11:21497578-21497390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1302-1500
               

               
Cow position:
               
chr11:25165471-25165282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 40
               

               
Conread position:
               
1310-1500
               

               
Cow position:
               
chr11:8339369-8339566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1310-1500
               

               
Cow position:
               
chr11:65431091-65430900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
1318-1500
               

               
Cow position:
               
chr11:42792944-42793133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
1325-1490
               

               
Cow position:
               
chr11:75918355-75918192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
1327-1497
               

               
Cow position:
               
chr11:16251224-16251404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 111
               

               
Conread position:
               
1327-1500
               

               
Cow position:
               
chr11:50197413-50197597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1335-1500
               

               
Cow position:
               
chr11:4412010-4412175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
1344-1500
               

               
Cow position:
               
chr11:67950969-67951120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 84
               
Show alignments to all cow chromosomes.