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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1143-1500
               

               
Cow position:
               
chr18:17390788-17391152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
33, 192
               

               
Conread position:
               
1150-1452
               

               
Cow position:
               
chr18:49038647-49038334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
1150-1481
               

               
Cow position:
               
chr18:14586287-14586622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 261
               

               
Conread position:
               
1152-1349
               

               
Cow position:
               
chr18:21187489-21187288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
1152-1500
               

               
Cow position:
               
chr18:18339769-18340143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr18:6881169-6881523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
1156-1353
               

               
Cow position:
               
chr18:35581863-35582060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 97
               

               
Conread position:
               
1156-1376
               

               
Cow position:
               
chr18:50359509-50359286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
1156-1382
               

               
Cow position:
               
chr18:22180595-22180818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 151
               

               
Conread position:
               
1156-1438
               

               
Cow position:
               
chr18:41950387-41950103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
1156-1480
               

               
Cow position:
               
chr18:12273836-12273502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr18:28930457-28930805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
1157-1500
               

               
Cow position:
               
chr18:12023452-12023810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
24, 138
               

               
Conread position:
               
1158-1495
               

               
Cow position:
               
chr18:20126477-20126135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
1159-1387
               

               
Cow position:
               
chr18:15809625-15809858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
1159-1494
               

               
Cow position:
               
chr18:9089875-9089531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
1161-1355
               

               
Cow position:
               
chr18:4485778-4485583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 168
               

               
Conread position:
               
1161-1467
               

               
Cow position:
               
chr18:54130159-54130476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
5, 62
               

               
Conread position:
               
1161-1489
               

               
Cow position:
               
chr18:22789910-22790236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
1161-1499
               

               
Cow position:
               
chr18:50637311-50637633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
196, 80
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr18:44262805-44262451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 183
               

               
Conread position:
               
1162-1476
               

               
Cow position:
               
chr18:1571057-1571388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 197
               

               
Conread position:
               
1163-1320
               

               
Cow position:
               
chr18:29091907-29091749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
85, 109
               

               
Conread position:
               
1163-1462
               

               
Cow position:
               
chr18:49017659-49017365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
1163-1497
               

               
Cow position:
               
chr18:47183134-47183455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 34
               

               
Conread position:
               
1163-1498
               

               
Cow position:
               
chr18:19849592-19849929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
183, 110
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr18:5189513-5189868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
85, 68
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr18:28101805-28101456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr18:29648957-29648610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 6
               

               
Conread position:
               
1166-1335
               

               
Cow position:
               
chr18:47419971-47419795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
1166-1376
               

               
Cow position:
               
chr18:6470268-6470049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1167-1326
               

               
Cow position:
               
chr18:12056519-12056675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1167-1331
               

               
Cow position:
               
chr18:47096597-47096429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
1171-1389
               

               
Cow position:
               
chr18:49015287-49015070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 50
               

               
Conread position:
               
1171-1496
               

               
Cow position:
               
chr18:7417080-7416761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
188, 74
               

               
Conread position:
               
1172-1332
               

               
Cow position:
               
chr18:44205924-44206085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
1172-1337
               

               
Cow position:
               
chr18:21143798-21143970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1172-1424
               

               
Cow position:
               
chr18:35367035-35367288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
1173-1380
               

               
Cow position:
               
chr18:35534981-35535196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
1173-1476
               

               
Cow position:
               
chr18:51643200-51643517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
1173-1499
               

               
Cow position:
               
chr18:18592633-18592302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 252
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr18:10576272-10575933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
94, 273
               

               
Conread position:
               
1174-1500
               

               
Cow position:
               
chr18:52877516-52877204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 86
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr18:5766576-5766237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
17, 161
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr18:15517008-15517340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 6
               

               
Conread position:
               
1177-1475
               

               
Cow position:
               
chr18:47525557-47525263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
1178-1336
               

               
Cow position:
               
chr18:9596341-9596178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr18:11857060-11856879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr18:2793812-2793995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1356
               

               
Cow position:
               
chr18:50004542-50004727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
68, 153
               

               
Conread position:
               
1178-1375
               

               
Cow position:
               
chr18:5647972-5647768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1376
               

               
Cow position:
               
chr18:45558307-45558101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1381
               

               
Cow position:
               
chr18:22568904-22569117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
1178-1388
               

               
Cow position:
               
chr18:18844175-18843956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 150
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr18:31711413-31711623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr18:38937984-38937763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
66, 198
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr18:49981294-49981498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
179, 47
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr18:50632281-50632501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1178-1393
               

               
Cow position:
               
chr18:2146428-2146641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
179, 61
               

               
Conread position:
               
1178-1396
               

               
Cow position:
               
chr18:38806731-38806520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 53
               

               
Conread position:
               
1178-1397
               

               
Cow position:
               
chr18:2773223-2773459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1178-1397
               

               
Cow position:
               
chr18:2776726-2776962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1178-1399
               

               
Cow position:
               
chr18:51383234-51383464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
72, 198
               

               
Conread position:
               
1178-1452
               

               
Cow position:
               
chr18:23630451-23630727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
1178-1480
               

               
Cow position:
               
chr18:20462543-20462849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
1178-1488
               

               
Cow position:
               
chr18:3132609-3132917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
1178-1494
               

               
Cow position:
               
chr18:247533-247851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 152
               

               
Conread position:
               
1178-1496
               

               
Cow position:
               
chr18:10891675-10891343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr18:20641337-20641663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 246
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:7956313-7955970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:9010869-9010547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 204
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:11691242-11691583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
74, 150
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:12117689-12118015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:12242441-12242101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 161
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:15173168-15172857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:18918799-18919134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:38985855-38985516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:42479416-42479763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
58, 270
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:45903732-45904069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 164
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr18:49100221-49100545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 71
               

               
Conread position:
               
1179-1370
               

               
Cow position:
               
chr18:47801933-47802130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 133
               

               
Conread position:
               
1179-1497
               

               
Cow position:
               
chr18:51405754-51406083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
1179-1499
               

               
Cow position:
               
chr18:48713705-48713375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 249
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr18:3180573-3180245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
68, 230
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr18:34444575-34444757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 155
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr18:48407894-48407715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr18:49602880-49603067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1180-1365
               

               
Cow position:
               
chr18:25598071-25598267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1180-1375
               

               
Cow position:
               
chr18:14225550-14225349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
1180-1380
               

               
Cow position:
               
chr18:35786215-35786006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr18:24719471-24719254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1180-1398
               

               
Cow position:
               
chr18:44917916-44917691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 215
               

               
Conread position:
               
1180-1461
               

               
Cow position:
               
chr18:33159105-33158818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
1180-1467
               

               
Cow position:
               
chr18:9846257-9846539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 219
               

               
Conread position:
               
1180-1475
               

               
Cow position:
               
chr18:7963579-7963294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
1180-1478
               

               
Cow position:
               
chr18:50095247-50095547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 83
               

               
Conread position:
               
1180-1488
               

               
Cow position:
               
chr18:51515103-51515430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 263
               

               
Conread position:
               
1180-1491
               

               
Cow position:
               
chr18:9558128-9557817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
1180-1495
               

               
Cow position:
               
chr18:8170929-8171255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 251
               

               
Conread position:
               
1180-1496
               

               
Cow position:
               
chr18:9066862-9066527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
64, 287
               

               
Conread position:
               
1180-1496
               

               
Cow position:
               
chr18:11867500-11867169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr18:6310242-6309910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr18:15613702-15614033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr18:42431452-42431780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 255
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr18:46452721-46453048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 215
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:5072255-5072588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 282
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:7650137-7649822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
78, 55
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:9366084-9365741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 261
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:9974168-9974499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 250
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:10905009-10904674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:10977053-10977382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:30341020-30341351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
63, 179
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:31082181-31082502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
51, 228
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:32883454-32883131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:42431930-42432269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 153
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:46048916-46048586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 209
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:55120029-55119706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr18:55505564-55505231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
1181-1389
               

               
Cow position:
               
chr18:43796798-43797014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1181-1498
               

               
Cow position:
               
chr18:19193211-19193539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr18:30359982-30360310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 263
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr18:31586233-31586541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
188, 11
               

               
Conread position:
               
1182-1495
               

               
Cow position:
               
chr18:28657759-28658079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
1182-1495
               

               
Cow position:
               
chr18:30586076-30586390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 154
               

               
Conread position:
               
1182-1496
               

               
Cow position:
               
chr18:33300045-33299731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr18:5578455-5578131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
202, 79
               

               
Conread position:
               
1183-1500
               

               
Cow position:
               
chr18:29065233-29065549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
1185-1486
               

               
Cow position:
               
chr18:11578214-11577927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
1187-1498
               

               
Cow position:
               
chr18:38607363-38607050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 21
               

               
Conread position:
               
1188-1464
               

               
Cow position:
               
chr18:25006352-25006628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
169, 69
               

               
Conread position:
               
1190-1355
               

               
Cow position:
               
chr18:43125229-43125062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 107
               

               
Conread position:
               
1190-1475
               

               
Cow position:
               
chr18:51594665-51594952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 56
               

               
Conread position:
               
1190-1488
               

               
Cow position:
               
chr18:11779805-11779496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 208
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr18:11184090-11183770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 139
               

               
Conread position:
               
1192-1498
               

               
Cow position:
               
chr18:11685107-11684815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
1201-1500
               

               
Cow position:
               
chr18:6609722-6610035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
1205-1500
               

               
Cow position:
               
chr18:29356496-29356802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
45, 234
               

               
Conread position:
               
1206-1494
               

               
Cow position:
               
chr18:48633902-48633623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
1208-1453
               

               
Cow position:
               
chr18:34834630-34834362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
1213-1494
               

               
Cow position:
               
chr18:54973882-54974157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
1214-1498
               

               
Cow position:
               
chr18:48452193-48451879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1214-1500
               

               
Cow position:
               
chr18:29958045-29958333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
66, 46
               

               
Conread position:
               
1214-1500
               

               
Cow position:
               
chr18:47512127-47511823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 215
               

               
Conread position:
               
1215-1495
               

               
Cow position:
               
chr18:12270618-12270340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
1223-1499
               

               
Cow position:
               
chr18:29058392-29058668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
1226-1390
               

               
Cow position:
               
chr18:47705342-47705175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1229-1500
               

               
Cow position:
               
chr18:17005365-17005079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 198
               

               
Conread position:
               
1235-1497
               

               
Cow position:
               
chr18:45637320-45637569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
1239-1500
               

               
Cow position:
               
chr18:50082165-50082425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 181
               

               
Conread position:
               
1242-1365
               

               
Cow position:
               
chr18:11672131-11672008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
1242-1389
               

               
Cow position:
               
chr18:52414056-52413906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1242-1396
               

               
Cow position:
               
chr18:9176988-9176837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 98
               

               
Conread position:
               
1242-1465
               

               
Cow position:
               
chr18:49841366-49841138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
1242-1497
               

               
Cow position:
               
chr18:37023461-37023725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
113, 190
               

               
Conread position:
               
1242-1498
               

               
Cow position:
               
chr18:39875171-39875432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr18:37002721-37002459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr18:22120795-22121056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 189
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr18:38687169-38686919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
115, 94
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr18:56159550-56159285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 56
               

               
Conread position:
               
1243-1499
               

               
Cow position:
               
chr18:28923761-28924008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
1245-1393
               

               
Cow position:
               
chr18:23505417-23505269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 140
               

               
Conread position:
               
1246-1378
               

               
Cow position:
               
chr18:2765334-2765205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
1246-1422
               

               
Cow position:
               
chr18:49324352-49324523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 13
               

               
Conread position:
               
1246-1476
               

               
Cow position:
               
chr18:46135829-46135591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 181
               

               
Conread position:
               
1246-1494
               

               
Cow position:
               
chr18:1954504-1954759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1246-1498
               

               
Cow position:
               
chr18:56184020-56183768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 179
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr18:36230642-36230895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
1248-1500
               

               
Cow position:
               
chr18:21740732-21740985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
106, 179
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr18:33008148-33007885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 62
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr18:36459013-36458756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 88
               

               
Conread position:
               
1250-1500
               

               
Cow position:
               
chr18:23766327-23766588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 189
               

               
Conread position:
               
1251-1496
               

               
Cow position:
               
chr18:21768694-21768459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
226, 86
               

               
Conread position:
               
1251-1497
               

               
Cow position:
               
chr18:35012238-35012480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
1252-1388
               

               
Cow position:
               
chr18:17660481-17660619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr18:38344885-38344631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 67
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr18:19273017-19273273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 183
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr18:19620023-19619777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr18:25282475-25282728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr18:30794505-30794259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr18:43555445-43555700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 183
               

               
Conread position:
               
1253-1392
               

               
Cow position:
               
chr18:52649269-52649409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1253-1498
               

               
Cow position:
               
chr18:34527016-34527272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
1254-1474
               

               
Cow position:
               
chr18:34219838-34220070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
50, 191
               

               
Conread position:
               
1254-1499
               

               
Cow position:
               
chr18:4182111-4182362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr18:55000665-55000911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
1255-1496
               

               
Cow position:
               
chr18:45571088-45570843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 36
               

               
Conread position:
               
1255-1500
               

               
Cow position:
               
chr18:18369286-18369538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
1255-1500
               

               
Cow position:
               
chr18:44801813-44802063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
1258-1388
               

               
Cow position:
               
chr18:53038906-53038772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1258-1475
               

               
Cow position:
               
chr18:16378996-16378794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
98, 123
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr18:36201556-36201801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 120
               

               
Conread position:
               
1259-1382
               

               
Cow position:
               
chr18:21081820-21081943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
1261-1496
               

               
Cow position:
               
chr18:43020334-43020562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 74
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr18:29796358-29796600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 161
               

               
Conread position:
               
1262-1500
               

               
Cow position:
               
chr18:13507671-13507914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
1263-1368
               

               
Cow position:
               
chr18:41724750-41724856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1263-1443
               

               
Cow position:
               
chr18:52406760-52406583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
1263-1465
               

               
Cow position:
               
chr18:42751535-42751752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 43
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr18:16686267-16686512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
94, 173
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr18:21102708-21102949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr18:4539815-4540054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 82
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr18:8300084-8299838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr18:51212249-51212011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
1266-1500
               

               
Cow position:
               
chr18:55461644-55461883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
1269-1498
               

               
Cow position:
               
chr18:44483711-44483928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 143
               

               
Conread position:
               
1272-1499
               

               
Cow position:
               
chr18:50382307-50382084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 65
               

               
Conread position:
               
1280-1500
               

               
Cow position:
               
chr18:11618519-11618303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
1283-1500
               

               
Cow position:
               
chr18:25206140-25206365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 83
               

               
Conread position:
               
1286-1463
               

               
Cow position:
               
chr18:22055829-22056018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1291-1499
               

               
Cow position:
               
chr18:25984531-25984744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 50
               

               
Conread position:
               
1291-1500
               

               
Cow position:
               
chr18:5487282-5487075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
1293-1484
               

               
Cow position:
               
chr18:30248101-30248290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
1310-1486
               

               
Cow position:
               
chr18:11832141-11831967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
1310-1500
               

               
Cow position:
               
chr18:33407638-33407439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
1320-1498
               

               
Cow position:
               
chr18:56361592-56361774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 114
               
Show alignments to all cow chromosomes.