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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1140-1500
               

               
Cow position:
               
chr21:30592015-30592383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
1143-1500
               

               
Cow position:
               
chr21:34010101-34010475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
1144-1381
               

               
Cow position:
               
chr21:46451680-46451906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1150-1495
               

               
Cow position:
               
chr21:47719013-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
1150-1500
               

               
Cow position:
               
chr21:48233887-48234238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
1151-1500
               

               
Cow position:
               
chr21:20153246-20152868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr21:29978486-29978835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
1156-1486
               

               
Cow position:
               
chr21:15543957-15544283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
1156-1498
               

               
Cow position:
               
chr21:9710468-9710782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
1157-1465
               

               
Cow position:
               
chr21:30231412-30231735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
1159-1448
               

               
Cow position:
               
chr21:46599637-46599331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
1160-1500
               

               
Cow position:
               
chr21:40134425-40134081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
104, 120
               

               
Conread position:
               
1161-1307
               

               
Cow position:
               
chr21:42341663-42341817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1161-1353
               

               
Cow position:
               
chr21:37837799-37837991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
1161-1389
               

               
Cow position:
               
chr21:71863-71625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
1161-1483
               

               
Cow position:
               
chr21:8426721-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1161-1494
               

               
Cow position:
               
chr21:33413820-33414158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
1161-1497
               

               
Cow position:
               
chr21:20262071-20262409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr21:1059336-1058998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
1162-1497
               

               
Cow position:
               
chr21:38121356-38121025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
1162-1497
               

               
Cow position:
               
chr21:46972888-46973206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
1163-1497
               

               
Cow position:
               
chr21:44658837-44658506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 167
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr21:15584144-15584498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr21:25764892-25764559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
196, 77
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr21:30222618-30222265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 277
               

               
Conread position:
               
1164-1498
               

               
Cow position:
               
chr21:45906346-45906698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
107, 282
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr21:42135343-42135699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 275
               

               
Conread position:
               
1165-1392
               

               
Cow position:
               
chr21:19868687-19868919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 217
               

               
Conread position:
               
1165-1499
               

               
Cow position:
               
chr21:10264311-10263955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
18, 283
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr21:82333-82000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 215
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr21:27810666-27810329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 176
               

               
Conread position:
               
1166-1355
               

               
Cow position:
               
chr21:236162-235978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1166-1375
               

               
Cow position:
               
chr21:28907275-28907492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 167
               

               
Conread position:
               
1168-1383
               

               
Cow position:
               
chr21:24875623-24875396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1169-1326
               

               
Cow position:
               
chr21:36398298-36398461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
1171-1335
               

               
Cow position:
               
chr21:40930208-40930382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1171-1449
               

               
Cow position:
               
chr21:28030547-28030260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 152
               

               
Conread position:
               
1171-1493
               

               
Cow position:
               
chr21:8349590-8349256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
1172-1397
               

               
Cow position:
               
chr21:20163975-20163738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
1173-1317
               

               
Cow position:
               
chr21:11298817-11298678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
134, 85
               

               
Conread position:
               
1173-1496
               

               
Cow position:
               
chr21:24858582-24858240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 276
               

               
Conread position:
               
1173-1497
               

               
Cow position:
               
chr21:16570155-16569825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr21:27229537-27229874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
1174-1450
               

               
Cow position:
               
chr21:14126537-14126259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
75, 178
               

               
Conread position:
               
1174-1497
               

               
Cow position:
               
chr21:47763861-47764191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
1174-1500
               

               
Cow position:
               
chr21:23822417-23822088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 214
               

               
Conread position:
               
1175-1357
               

               
Cow position:
               
chr21:8506283-8506475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1175-1357
               

               
Cow position:
               
chr21:8509171-8509363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1175-1438
               

               
Cow position:
               
chr21:11678058-11678308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr21:22121766-22121443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr21:24598907-24598582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
1176-1497
               

               
Cow position:
               
chr21:11644702-11645046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
9, 275
               

               
Conread position:
               
1177-1334
               

               
Cow position:
               
chr21:21159065-21158905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1177-1383
               

               
Cow position:
               
chr21:17252715-17252934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 172
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr21:13883738-13883554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr21:30658122-30657943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1366
               

               
Cow position:
               
chr21:20174573-20174379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1178-1366
               

               
Cow position:
               
chr21:26735658-26735470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 130
               

               
Conread position:
               
1178-1373
               

               
Cow position:
               
chr21:15012692-15012493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
1178-1374
               

               
Cow position:
               
chr21:25012339-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
1178-1378
               

               
Cow position:
               
chr21:6851426-6851221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr21:39394010-39393786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
1178-1396
               

               
Cow position:
               
chr21:12104614-12104396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
84, 70
               

               
Conread position:
               
1178-1396
               

               
Cow position:
               
chr21:16498776-16498550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
1178-1403
               

               
Cow position:
               
chr21:22851176-22850943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 168
               

               
Conread position:
               
1178-1464
               

               
Cow position:
               
chr21:742535-742245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
69, 155
               

               
Conread position:
               
1178-1475
               

               
Cow position:
               
chr21:674929-674638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
1178-1475
               

               
Cow position:
               
chr21:22014452-22014133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
29, 33
               

               
Conread position:
               
1178-1486
               

               
Cow position:
               
chr21:32559110-32559424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 234
               

               
Conread position:
               
1178-1492
               

               
Cow position:
               
chr21:641845-641512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 264
               

               
Conread position:
               
1178-1495
               

               
Cow position:
               
chr21:41590305-41590634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
70, 254
               

               
Conread position:
               
1178-1496
               

               
Cow position:
               
chr21:4280426-4280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
181, 43
               

               
Conread position:
               
1178-1496
               

               
Cow position:
               
chr21:32339484-32339813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
69, 255
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr21:44214372-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr21:29069062-29069406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
72, 265
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr21:34654331-34654000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 253
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:643581-643249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:802062-802374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 213
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:957930-957593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:4400054-4399718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:5427188-5426860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 107
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:6834311-6833969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
71, 263
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:7673374-7673047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 147
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:11739860-11740195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:15911639-15911320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
182, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr21:37299721-37299390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
1179-1332
               

               
Cow position:
               
chr21:31462817-31462658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1179-1339
               

               
Cow position:
               
chr21:7460865-7460696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1179-1498
               

               
Cow position:
               
chr21:28244727-28244392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
1180-1346
               

               
Cow position:
               
chr21:45376206-45376033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
64, 155
               

               
Conread position:
               
1180-1381
               

               
Cow position:
               
chr21:21616035-21615828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
1180-1483
               

               
Cow position:
               
chr21:5465006-5464685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr21:3236762-3236448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 126
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr21:39403269-39403613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
70, 264
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr21:45356074-45355760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
176, 62
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr21:5898150-5898476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr21:38901022-38900701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr21:27863260-27863594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr21:37480223-37479881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
70, 159
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:6051764-6051428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 252
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:10673369-10673052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
85, 118
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:12461710-12462049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:20418447-20418764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
175, 72
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:23587131-23586801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr21:33982555-33982884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
1181-1497
               

               
Cow position:
               
chr21:46848875-46849202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 161
               

               
Conread position:
               
1181-1499
               

               
Cow position:
               
chr21:38449194-38449527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
68, 148
               

               
Conread position:
               
1182-1396
               

               
Cow position:
               
chr21:7169944-7169722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 208
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr21:8207014-8206693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
173, 69
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr21:44565472-44565786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
1184-1500
               

               
Cow position:
               
chr21:9939953-9940273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
175, 59
               

               
Conread position:
               
1185-1382
               

               
Cow position:
               
chr21:19240624-19240828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1188-1380
               

               
Cow position:
               
chr21:41287545-41287746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr21:31691723-31691403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
1190-1389
               

               
Cow position:
               
chr21:36682562-36682363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
1191-1499
               

               
Cow position:
               
chr21:22861240-22860921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr21:7824942-7825256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr21:10561337-10561663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
67, 254
               

               
Conread position:
               
1193-1500
               

               
Cow position:
               
chr21:3360770-3361090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
1197-1397
               

               
Cow position:
               
chr21:828968-829178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
1197-1500
               

               
Cow position:
               
chr21:31253775-31253464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 160
               

               
Conread position:
               
1212-1498
               

               
Cow position:
               
chr21:29485195-29484902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
1214-1379
               

               
Cow position:
               
chr21:30243460-30243633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1214-1497
               

               
Cow position:
               
chr21:9416475-9416170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 230
               

               
Conread position:
               
1223-1498
               

               
Cow position:
               
chr21:32297311-32297584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
1231-1480
               

               
Cow position:
               
chr21:297949-297694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
1235-1495
               

               
Cow position:
               
chr21:46264361-46264098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 22
               

               
Conread position:
               
1235-1496
               

               
Cow position:
               
chr21:33912-33645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
120, 153
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr21:18800341-18800608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
103, 162
               

               
Conread position:
               
1239-1376
               

               
Cow position:
               
chr21:14228091-14228229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1239-1500
               

               
Cow position:
               
chr21:18941645-18941909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
1242-1388
               

               
Cow position:
               
chr21:11057695-11057839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
1242-1388
               

               
Cow position:
               
chr21:30980392-30980538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
1242-1398
               

               
Cow position:
               
chr21:19359990-19360151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1242-1496
               

               
Cow position:
               
chr21:41579942-41579676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr21:9990696-9990437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
115, 133
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr21:33350927-33350667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
115, 173
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr21:33563189-33562934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 72
               

               
Conread position:
               
1243-1497
               

               
Cow position:
               
chr21:28191217-28190956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
114, 97
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr21:44825701-44825964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 188
               

               
Conread position:
               
1244-1500
               

               
Cow position:
               
chr21:396051-395791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
115, 97
               

               
Conread position:
               
1246-1378
               

               
Cow position:
               
chr21:8625355-8625227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
1246-1382
               

               
Cow position:
               
chr21:5341912-5342049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1246-1481
               

               
Cow position:
               
chr21:29014376-29014620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1246-1498
               

               
Cow position:
               
chr21:36297676-36297413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
9, 193
               

               
Conread position:
               
1246-1499
               

               
Cow position:
               
chr21:22465372-22465119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr21:7581723-7581985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr21:27568991-27569239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
1247-1381
               

               
Cow position:
               
chr21:41046987-41046853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
110, 89
               

               
Conread position:
               
1247-1500
               

               
Cow position:
               
chr21:724698-724965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
44, 92
               

               
Conread position:
               
1247-1500
               

               
Cow position:
               
chr21:36795784-36795521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
105, 186
               

               
Conread position:
               
1248-1421
               

               
Cow position:
               
chr21:7394109-7394287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
109, 69
               

               
Conread position:
               
1248-1490
               

               
Cow position:
               
chr21:5392356-5392608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
1249-1497
               

               
Cow position:
               
chr21:26245093-26244844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
110, 180
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr21:29001978-29002237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
1251-1496
               

               
Cow position:
               
chr21:33264022-33263774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1251-1499
               

               
Cow position:
               
chr21:42384687-42384431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 174
               

               
Conread position:
               
1251-1500
               

               
Cow position:
               
chr21:28626414-28626161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
133, 86
               

               
Conread position:
               
1252-1478
               

               
Cow position:
               
chr21:868748-868982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1252-1498
               

               
Cow position:
               
chr21:45262634-45262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr21:13365518-13365260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
107, 89
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:27624874-27624630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
107, 138
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:28442908-28442667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 139
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:30250029-30250269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:30990111-30990349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
146, 69
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:33210364-33210123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 133
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:41974202-41974454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 84
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr21:42348520-42348753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr21:12723328-12723081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr21:18850048-18850305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 91
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr21:31090260-31090499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
1254-1467
               

               
Cow position:
               
chr21:41522241-41522453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr21:35354703-35354454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
37, 178
               

               
Conread position:
               
1261-1499
               

               
Cow position:
               
chr21:19258985-19258751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 75
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr21:47215029-47215260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1263-1393
               

               
Cow position:
               
chr21:31147770-31147899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 105
               

               
Conread position:
               
1263-1497
               

               
Cow position:
               
chr21:30606919-30607172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 172
               

               
Conread position:
               
1263-1497
               

               
Cow position:
               
chr21:32237444-32237218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 43
               

               
Conread position:
               
1263-1499
               

               
Cow position:
               
chr21:29213995-29214229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
94, 152
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr21:2679713-2679477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr21:12801582-12801826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 168
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr21:18828138-18828385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr21:20260157-20260400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
89, 8
               

               
Conread position:
               
1266-1446
               

               
Cow position:
               
chr21:20183233-20183044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 179
               

               
Conread position:
               
1272-1500
               

               
Cow position:
               
chr21:19363304-19363542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
1275-1500
               

               
Cow position:
               
chr21:42540069-42540295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
82, 153
               

               
Conread position:
               
1277-1390
               

               
Cow position:
               
chr21:7088751-7088637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1277-1497
               

               
Cow position:
               
chr21:20193045-20192821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 48
               

               
Conread position:
               
1277-1500
               

               
Cow position:
               
chr21:39401741-39401515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 34
               

               
Conread position:
               
1278-1498
               

               
Cow position:
               
chr21:16187657-16187885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 155
               

               
Conread position:
               
1278-1499
               

               
Cow position:
               
chr21:18842087-18842312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 150
               

               
Conread position:
               
1279-1500
               

               
Cow position:
               
chr21:34390826-34391054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
1292-1500
               

               
Cow position:
               
chr21:44515400-44515184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
1294-1497
               

               
Cow position:
               
chr21:10601241-10601450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1294-1498
               

               
Cow position:
               
chr21:46859988-46860181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 36
               

               
Conread position:
               
1302-1500
               

               
Cow position:
               
chr21:2367458-2367255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1317-1500
               

               
Cow position:
               
chr21:18041736-18041927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
42, 118
               
Show alignments to all cow chromosomes.