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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1054-1389
               

               
Cow position:
               
chr28:4439025-4438690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
228, 181
               

               
Conread position:
               
1145-1500
               

               
Cow position:
               
chr28:11426311-11426679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 287
               

               
Conread position:
               
1147-1422
               

               
Cow position:
               
chr28:7131859-7132137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
1148-1388
               

               
Cow position:
               
chr28:11816452-11816686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
209, 56
               

               
Conread position:
               
1152-1494
               

               
Cow position:
               
chr28:27218553-27218193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
98, 172
               

               
Conread position:
               
1153-1496
               

               
Cow position:
               
chr28:29988880-29989246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 295
               

               
Conread position:
               
1155-1321
               

               
Cow position:
               
chr28:24238257-24238429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
1155-1497
               

               
Cow position:
               
chr28:5204409-5204055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr28:8347957-8347593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
1156-1366
               

               
Cow position:
               
chr28:4876659-4876445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
1156-1375
               

               
Cow position:
               
chr28:17948894-17949120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 7
               

               
Conread position:
               
1156-1449
               

               
Cow position:
               
chr28:7350873-7350571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
93, 5
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr28:21502605-21502257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
1158-1332
               

               
Cow position:
               
chr28:10763110-10762931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
1158-1372
               

               
Cow position:
               
chr28:30902341-30902122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
1160-1500
               

               
Cow position:
               
chr28:26615073-26614747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
1161-1377
               

               
Cow position:
               
chr28:8396545-8396326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
1161-1382
               

               
Cow position:
               
chr28:29850604-29850829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
1161-1396
               

               
Cow position:
               
chr28:5255092-5254846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1161-1497
               

               
Cow position:
               
chr28:21845170-21844825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
1161-1498
               

               
Cow position:
               
chr28:4884034-4884398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 295
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr28:9636238-9636590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 291
               

               
Conread position:
               
1162-1389
               

               
Cow position:
               
chr28:5205469-5205250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
195, 48
               

               
Conread position:
               
1162-1464
               

               
Cow position:
               
chr28:12933518-12933832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
1163-1497
               

               
Cow position:
               
chr28:6091575-6091229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr28:11828742-11829075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 174
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr28:33884621-33884271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
1164-1328
               

               
Cow position:
               
chr28:16767393-16767555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1164-1340
               

               
Cow position:
               
chr28:26867938-26868122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1165-1389
               

               
Cow position:
               
chr28:24646798-24646572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
1167-1500
               

               
Cow position:
               
chr28:24343567-24343233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
1168-1388
               

               
Cow position:
               
chr28:11016618-11016387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
1169-1389
               

               
Cow position:
               
chr28:3410778-3411008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
1170-1500
               

               
Cow position:
               
chr28:16210889-16211229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 212
               

               
Conread position:
               
1171-1353
               

               
Cow position:
               
chr28:10890533-10890719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1171-1388
               

               
Cow position:
               
chr28:6975443-6975222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
79, 219
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr28:2131733-2132056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
186, 33
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr28:3023707-3024049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 265
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr28:3746406-3746068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 256
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr28:9285168-9285511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
1173-1377
               

               
Cow position:
               
chr28:5805869-5805662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
1173-1499
               

               
Cow position:
               
chr28:11527051-11527395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
8, 158
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr28:7267743-7268073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr28:20963342-20963666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
186, 13
               

               
Conread position:
               
1175-1500
               

               
Cow position:
               
chr28:3078491-3078818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
93, 52
               

               
Conread position:
               
1176-1374
               

               
Cow position:
               
chr28:25675319-25675511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
1176-1500
               

               
Cow position:
               
chr28:7865509-7865187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
1177-1396
               

               
Cow position:
               
chr28:3143682-3143904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
1178-1318
               

               
Cow position:
               
chr28:2737325-2737467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1178-1323
               

               
Cow position:
               
chr28:4866376-4866527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1338
               

               
Cow position:
               
chr28:8936350-8936181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1178-1351
               

               
Cow position:
               
chr28:9109413-9109234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
1178-1353
               

               
Cow position:
               
chr28:26784054-26784225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1178-1363
               

               
Cow position:
               
chr28:10891124-10891303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
1178-1378
               

               
Cow position:
               
chr28:17740027-17739815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 174
               

               
Conread position:
               
1178-1382
               

               
Cow position:
               
chr28:5138797-5139005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1382
               

               
Cow position:
               
chr28:9705858-9705639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
1178-1388
               

               
Cow position:
               
chr28:7618958-7619171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr28:2762374-2762174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr28:10964610-10964402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
1178-1415
               

               
Cow position:
               
chr28:7557525-7557777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 209
               

               
Conread position:
               
1178-1421
               

               
Cow position:
               
chr28:4006983-4006735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 181
               

               
Conread position:
               
1178-1458
               

               
Cow position:
               
chr28:10588831-10589123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 102
               

               
Conread position:
               
1178-1467
               

               
Cow position:
               
chr28:9740660-9740362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 222
               

               
Conread position:
               
1178-1490
               

               
Cow position:
               
chr28:11346287-11346612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
71, 236
               

               
Conread position:
               
1178-1495
               

               
Cow position:
               
chr28:11079502-11079175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr28:5684902-5684576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 104
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr28:26719532-26719216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr28:4089859-4090183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr28:30937481-30937798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr28:29416523-29416849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 146
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:3492585-3492922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 176
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:5436884-5437225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 137
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:7008779-7009112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 263
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:10863598-10863919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:11422617-11422948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:11585007-11585342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:11884329-11884657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:12430808-12430470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:20124983-20124646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:21868659-21868318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 260
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:23007540-23007871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:23460346-23460011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 212
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:23724267-23724592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
72, 228
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:23793118-23793440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr28:25057158-25056833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
66, 26
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:4016724-4016401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:11866467-11866803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 109
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:12951617-12951291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:22571483-22571802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:30326900-30327228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr28:30746537-30746865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
1180-1354
               

               
Cow position:
               
chr28:8681237-8681414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 160
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr28:13269918-13269745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 158
               

               
Conread position:
               
1180-1382
               

               
Cow position:
               
chr28:777876-777661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1180-1388
               

               
Cow position:
               
chr28:4101712-4101499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr28:8304442-8304226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 157
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr28:12991335-12991115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1180-1420
               

               
Cow position:
               
chr28:4013283-4013027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1180-1429
               

               
Cow position:
               
chr28:32358304-32358051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 204
               

               
Conread position:
               
1180-1488
               

               
Cow position:
               
chr28:13474499-13474175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 254
               

               
Conread position:
               
1180-1489
               

               
Cow position:
               
chr28:22813448-22813139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 146
               

               
Conread position:
               
1180-1491
               

               
Cow position:
               
chr28:19564035-19564354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
74, 269
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr28:8787739-8787405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 134
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr28:24082470-24082133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr28:16369889-16370212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 217
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr28:4071158-4070832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr28:4643570-4643900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 214
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr28:5074321-5074646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
202, 111
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr28:22500306-22500622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 52
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr28:23410134-23410463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 251
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr28:1099478-1099782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
182, 68
               

               
Conread position:
               
1182-1347
               

               
Cow position:
               
chr28:3678557-3678384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1182-1465
               

               
Cow position:
               
chr28:4182199-4181900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
68, 53
               

               
Conread position:
               
1182-1478
               

               
Cow position:
               
chr28:25129082-25128768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
62, 152
               

               
Conread position:
               
1182-1498
               

               
Cow position:
               
chr28:24966584-24966256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
68, 256
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr28:16918976-16919297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
1183-1500
               

               
Cow position:
               
chr28:4834646-4834979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
67, 40
               

               
Conread position:
               
1186-1500
               

               
Cow position:
               
chr28:14998258-14997928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 250
               

               
Conread position:
               
1187-1496
               

               
Cow position:
               
chr28:5818031-5817709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
63, 210
               

               
Conread position:
               
1187-1498
               

               
Cow position:
               
chr28:34134051-34133727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
1188-1494
               

               
Cow position:
               
chr28:3914897-3914579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 59
               

               
Conread position:
               
1189-1498
               

               
Cow position:
               
chr28:21598077-21598389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
1192-1374
               

               
Cow position:
               
chr28:16879756-16879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1205-1475
               

               
Cow position:
               
chr28:3741044-3740767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1205-1500
               

               
Cow position:
               
chr28:4938971-4938697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
1208-1453
               

               
Cow position:
               
chr28:7927341-7927084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
1213-1500
               

               
Cow position:
               
chr28:16346369-16346664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 113
               

               
Conread position:
               
1214-1497
               

               
Cow position:
               
chr28:3408056-3408348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
1215-1500
               

               
Cow position:
               
chr28:31841182-31841473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 76
               

               
Conread position:
               
1216-1499
               

               
Cow position:
               
chr28:9684173-9684453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
28, 184
               

               
Conread position:
               
1221-1500
               

               
Cow position:
               
chr28:15043713-15043998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
1226-1499
               

               
Cow position:
               
chr28:25596777-25596496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
1235-1498
               

               
Cow position:
               
chr28:4159089-4158823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
1242-1378
               

               
Cow position:
               
chr28:3397077-3397207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1242-1476
               

               
Cow position:
               
chr28:5577657-5577412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
1242-1490
               

               
Cow position:
               
chr28:26982611-26982870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
123, 186
               

               
Conread position:
               
1242-1495
               

               
Cow position:
               
chr28:8140609-8140350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 187
               

               
Conread position:
               
1242-1497
               

               
Cow position:
               
chr28:26743753-26743484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
113, 198
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr28:2752367-2752634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 188
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr28:19025878-19026149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr28:25249481-25249217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
113, 188
               

               
Conread position:
               
1243-1379
               

               
Cow position:
               
chr28:26531153-26531288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr28:26220382-26220118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
1248-1475
               

               
Cow position:
               
chr28:7372001-7372234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
109, 181
               

               
Conread position:
               
1249-1382
               

               
Cow position:
               
chr28:7498027-7498161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1249-1440
               

               
Cow position:
               
chr28:11348542-11348352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
1249-1460
               

               
Cow position:
               
chr28:12070351-12070139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 181
               

               
Conread position:
               
1249-1496
               

               
Cow position:
               
chr28:2960710-2960965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr28:27161207-27161467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
1250-1500
               

               
Cow position:
               
chr28:1632538-1632792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 115
               

               
Conread position:
               
1251-1499
               

               
Cow position:
               
chr28:18186674-18186418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 118
               

               
Conread position:
               
1252-1355
               

               
Cow position:
               
chr28:10212310-10212413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1252-1378
               

               
Cow position:
               
chr28:3147595-3147472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
105, 7
               

               
Conread position:
               
1252-1389
               

               
Cow position:
               
chr28:10775594-10775734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
1252-1466
               

               
Cow position:
               
chr28:16245948-16246166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
105, 71
               

               
Conread position:
               
1252-1497
               

               
Cow position:
               
chr28:28164204-28163951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr28:6059353-6059606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr28:6971231-6971481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
107, 164
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr28:10172300-10172547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr28:12619691-12619429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
102, 39
               

               
Conread position:
               
1254-1393
               

               
Cow position:
               
chr28:22147897-22148039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
6, 130
               

               
Conread position:
               
1258-1497
               

               
Cow position:
               
chr28:12892326-12892567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 81
               

               
Conread position:
               
1258-1497
               

               
Cow position:
               
chr28:22332639-22332401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
1258-1499
               

               
Cow position:
               
chr28:8408847-8408598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 136
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr28:8021992-8022246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr28:25806686-25806434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 175
               

               
Conread position:
               
1259-1500
               

               
Cow position:
               
chr28:4809889-4809660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 127
               

               
Conread position:
               
1260-1500
               

               
Cow position:
               
chr28:2873027-2872780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 13
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr28:16204226-16204466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 168
               

               
Conread position:
               
1263-1397
               

               
Cow position:
               
chr28:4051304-4051170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
94, 131
               

               
Conread position:
               
1263-1473
               

               
Cow position:
               
chr28:34247923-34248133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 138
               

               
Conread position:
               
1263-1498
               

               
Cow position:
               
chr28:14649448-14649213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 44
               

               
Conread position:
               
1263-1499
               

               
Cow position:
               
chr28:22346127-22345883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr28:5128622-5128863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr28:11752033-11752278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr28:12964673-12964433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr28:18591376-18591136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
96, 62
               

               
Conread position:
               
1264-1496
               

               
Cow position:
               
chr28:11786612-11786846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 150
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr28:2862972-2862728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr28:24018088-24017860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
189, 89
               

               
Conread position:
               
1266-1500
               

               
Cow position:
               
chr28:23676241-23676003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
1269-1500
               

               
Cow position:
               
chr28:4536559-4536319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 168
               

               
Conread position:
               
1284-1495
               

               
Cow position:
               
chr28:21672878-21672670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
1304-1500
               

               
Cow position:
               
chr28:4588162-4587962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
1306-1500
               

               
Cow position:
               
chr28:7548995-7549196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
1310-1499
               

               
Cow position:
               
chr28:3256857-3256661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
1310-1500
               

               
Cow position:
               
chr28:2737747-2737945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 126
               

               
Conread position:
               
1364-1500
               

               
Cow position:
               
chr28:8348658-8348787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               
Show alignments to all cow chromosomes.