Cow genome map

Conread name: Ss1.1-Utr1-UTR010020F01.5.5

Conread position: 1139-1440
Cow position:
Alignm length: 329
Alignm identity: 224
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 11, 201

Conread position: 1148-1498
Cow position:
Alignm length: 379
Alignm identity: 259
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 11

Conread position: 1149-1500
Cow position:
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 12

Conread position: 1156-1386
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 87, 15

Conread position: 1156-1500
Cow position:
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 7

Conread position: 1156-1500
Cow position:
Alignm length: 367
Alignm identity: 247
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 14, 97

Conread position: 1156-1500
Cow position:
Alignm length: 366
Alignm identity: 253
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 25, 180

Conread position: 1156-1500
Cow position:
Alignm length: 349
Alignm identity: 240
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 25, 94

Conread position: 1158-1500
Cow position:
Alignm length: 357
Alignm identity: 231
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 20

Conread position: 1160-1389
Cow position:
Alignm length: 234
Alignm identity: 163
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 1161-1381
Cow position:
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 31, 8

Conread position: 1161-1500
Cow position:
Alignm length: 351
Alignm identity: 235
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 83, 17

Conread position: 1162-1351
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 18

Conread position: 1162-1376
Cow position:
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 1163-1358
Cow position:
Alignm length: 196
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 1163-1388
Cow position:
Alignm length: 235
Alignm identity: 172
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 87, 20

Conread position: 1163-1389
Cow position:
Alignm length: 236
Alignm identity: 165
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 75, 41

Conread position: 1163-1481
Cow position:
Alignm length: 329
Alignm identity: 217
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 182, 83

Conread position: 1163-1499
Cow position:
Alignm length: 351
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 44

Conread position: 1163-1500
Cow position:
Alignm length: 352
Alignm identity: 237
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 80, 151

Conread position: 1163-1500
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 43

Conread position: 1165-1354
Cow position:
Alignm length: 190
Alignm identity: 142
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 84, 0

Conread position: 1165-1497
Cow position:
Alignm length: 344
Alignm identity: 236
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 6, 48

Conread position: 1171-1352
Cow position:
Alignm length: 193
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 122

Conread position: 1171-1368
Cow position:
Alignm length: 213
Alignm identity: 154
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 78, 32

Conread position: 1173-1342
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 1173-1500
Cow position:
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 138

Conread position: 1178-1308
Cow position:
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 1178-1334
Cow position:
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 37, 82

Conread position: 1178-1374
Cow position:
Alignm length: 204
Alignm identity: 157
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 85, 0

Conread position: 1178-1375
Cow position:
Alignm length: 201
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 79, 0

Conread position: 1178-1398
Cow position:
Alignm length: 224
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 105

Conread position: 1178-1415
Cow position:
Alignm length: 246
Alignm identity: 181
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 71, 45

Conread position: 1178-1466
Cow position:
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 26

Conread position: 1178-1473
Cow position:
Alignm length: 312
Alignm identity: 221
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 72, 261

Conread position: 1178-1493
Cow position:
Alignm length: 329
Alignm identity: 234
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 116, 26

Conread position: 1178-1495
Cow position:
Alignm length: 322
Alignm identity: 218
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 72, 27

Conread position: 1178-1496
Cow position:
Alignm length: 329
Alignm identity: 212
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 199

Conread position: 1178-1497
Cow position:
Alignm length: 326
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 204, 158

Conread position: 1178-1498
Cow position:
Alignm length: 330
Alignm identity: 225
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 72, 153

Conread position: 1178-1498
Cow position:
Alignm length: 341
Alignm identity: 245
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 70, 32

Conread position: 1178-1499
Cow position:
Alignm length: 343
Alignm identity: 235
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 78, 12

Conread position: 1178-1500
Cow position:
Alignm length: 340
Alignm identity: 236
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 71, 45

Conread position: 1178-1500
Cow position:
Alignm length: 346
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 72, 117

Conread position: 1178-1500
Cow position:
Alignm length: 335
Alignm identity: 222
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 60, 35

Conread position: 1178-1500
Cow position:
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 157

Conread position: 1178-1500
Cow position:
Alignm length: 344
Alignm identity: 245
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 72, 260

Conread position: 1178-1500
Cow position:
Alignm length: 325
Alignm identity: 215
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 176, 19

Conread position: 1179-1500
Cow position:
Alignm length: 336
Alignm identity: 218
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 187

Conread position: 1179-1500
Cow position:
Alignm length: 334
Alignm identity: 227
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 71, 199

Conread position: 1179-1500
Cow position:
Alignm length: 336
Alignm identity: 221
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 1180-1328
Cow position:
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 88

Conread position: 1180-1341
Cow position:
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 28

Conread position: 1180-1365
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 69, 0

Conread position: 1180-1372
Cow position:
Alignm length: 204
Alignm identity: 156
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 70, 153

Conread position: 1180-1376
Cow position:
Alignm length: 205
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 164

Conread position: 1180-1468
Cow position:
Alignm length: 292
Alignm identity: 189
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 63, 132

Conread position: 1180-1475
Cow position:
Alignm length: 305
Alignm identity: 202
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 175, 71

Conread position: 1180-1496
Cow position:
Alignm length: 330
Alignm identity: 230
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 64, 27

Conread position: 1180-1498
Cow position:
Alignm length: 324
Alignm identity: 211
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 88, 59

Conread position: 1180-1498
Cow position:
Alignm length: 331
Alignm identity: 233
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 70, 104

Conread position: 1180-1500
Cow position:
Alignm length: 333
Alignm identity: 234
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 65, 31

Conread position: 1180-1500
Cow position:
Alignm length: 343
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 133

Conread position: 1180-1500
Cow position:
Alignm length: 343
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 1181-1389
Cow position:
Alignm length: 222
Alignm identity: 167
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 1181-1458
Cow position:
Alignm length: 295
Alignm identity: 200
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 65, 164

Conread position: 1181-1498
Cow position:
Alignm length: 325
Alignm identity: 228
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 78, 60

Conread position: 1181-1498
Cow position:
Alignm length: 337
Alignm identity: 223
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 59, 108

Conread position: 1181-1500
Cow position:
Alignm length: 340
Alignm identity: 243
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 64, 265

Conread position: 1181-1500
Cow position:
Alignm length: 328
Alignm identity: 217
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 144, 61

Conread position: 1182-1397
Cow position:
Alignm length: 228
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 130

Conread position: 1182-1499
Cow position:
Alignm length: 327
Alignm identity: 217
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 205

Conread position: 1184-1420
Cow position:
Alignm length: 250
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 93

Conread position: 1186-1353
Cow position:
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 1187-1500
Cow position:
Alignm length: 326
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 172, 113

Conread position: 1188-1446
Cow position:
Alignm length: 269
Alignm identity: 187
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 55, 206

Conread position: 1191-1332
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 85

Conread position: 1192-1493
Cow position:
Alignm length: 317
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 208

Conread position: 1193-1381
Cow position:
Alignm length: 200
Alignm identity: 149
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 1197-1499
Cow position:
Alignm length: 312
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 238

Conread position: 1197-1500
Cow position:
Alignm length: 309
Alignm identity: 204
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 162, 58

Conread position: 1202-1382
Cow position:
Alignm length: 192
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 1205-1413
Cow position:
Alignm length: 210
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 152, 32

Conread position: 1210-1420
Cow position:
Alignm length: 226
Alignm identity: 163
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 69

Conread position: 1214-1499
Cow position:
Alignm length: 291
Alignm identity: 194
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 145, 33

Conread position: 1223-1378
Cow position:
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 57

Conread position: 1224-1382
Cow position:
Alignm length: 160
Alignm identity: 117
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 133, 11

Conread position: 1232-1500
Cow position:
Alignm length: 277
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 17

Conread position: 1238-1493
Cow position:
Alignm length: 261
Alignm identity: 178
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 93, 165

Conread position: 1239-1498
Cow position:
Alignm length: 264
Alignm identity: 170
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 189

Conread position: 1241-1389
Cow position:
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 66

Conread position: 1241-1485
Cow position:
Alignm length: 256
Alignm identity: 192
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 116, 187

Conread position: 1241-1496
Cow position:
Alignm length: 263
Alignm identity: 173
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 95

Conread position: 1242-1355
Cow position:
Alignm length: 114
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1242-1389
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 1242-1500
Cow position:
Alignm length: 269
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 1242-1500
Cow position:
Alignm length: 263
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 65, 57

Conread position: 1242-1500
Cow position:
Alignm length: 270
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 127

Conread position: 1242-1500
Cow position:
Alignm length: 265
Alignm identity: 182
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 24, 63

Conread position: 1242-1500
Cow position:
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 141

Conread position: 1245-1500
Cow position:
Alignm length: 262
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 109, 138

Conread position: 1246-1499
Cow position:
Alignm length: 261
Alignm identity: 173
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 111, 119

Conread position: 1246-1500
Cow position:
Alignm length: 260
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 111, 180

Conread position: 1249-1392
Cow position:
Alignm length: 145
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 1249-1461
Cow position:
Alignm length: 225
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 108, 184

Conread position: 1249-1500
Cow position:
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 108, 87

Conread position: 1249-1500
Cow position:
Alignm length: 261
Alignm identity: 174
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 136, 103

Conread position: 1249-1500
Cow position:
Alignm length: 253
Alignm identity: 191
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 112, 75

Conread position: 1249-1500
Cow position:
Alignm length: 254
Alignm identity: 189
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 108, 20

Conread position: 1249-1500
Cow position:
Alignm length: 256
Alignm identity: 187
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 110, 76

Conread position: 1249-1500
Cow position:
Alignm length: 257
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 177

Conread position: 1251-1392
Cow position:
Alignm length: 143
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 1251-1495
Cow position:
Alignm length: 254
Alignm identity: 193
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 108, 12

Conread position: 1252-1382
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 46

Conread position: 1252-1396
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 105, 73

Conread position: 1252-1424
Cow position:
Alignm length: 175
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 105, 48

Conread position: 1252-1486
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 130, 79

Conread position: 1252-1495
Cow position:
Alignm length: 253
Alignm identity: 187
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 105, 78

Conread position: 1252-1498
Cow position:
Alignm length: 251
Alignm identity: 178
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 127, 94

Conread position: 1252-1500
Cow position:
Alignm length: 261
Alignm identity: 195
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 107, 52

Conread position: 1252-1500
Cow position:
Alignm length: 255
Alignm identity: 169
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 103, 7

Conread position: 1253-1387
Cow position:
Alignm length: 136
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 101, 72

Conread position: 1253-1497
Cow position:
Alignm length: 254
Alignm identity: 179
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 82, 89

Conread position: 1253-1500
Cow position:
Alignm length: 259
Alignm identity: 183
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 9, 123

Conread position: 1254-1488
Cow position:
Alignm length: 239
Alignm identity: 182
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 130, 97

Conread position: 1258-1389
Cow position:
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 1258-1500
Cow position:
Alignm length: 258
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 163

Conread position: 1263-1389
Cow position:
Alignm length: 128
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 91, 0

Conread position: 1263-1458
Cow position:
Alignm length: 208
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 94, 164

Conread position: 1263-1499
Cow position:
Alignm length: 240
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 119

Conread position: 1263-1500
Cow position:
Alignm length: 252
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 96, 41

Conread position: 1264-1500
Cow position:
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 92, 165

Conread position: 1265-1498
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 92, 0

Conread position: 1277-1497
Cow position:
Alignm length: 229
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 155

Conread position: 1278-1500
Cow position:
Alignm length: 229
Alignm identity: 154
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 81, 98

Conread position: 1281-1498
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 78, 9

Conread position: 1281-1500
Cow position:
Alignm length: 222
Alignm identity: 151
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 80, 99

Conread position: 1285-1495
Cow position:
Alignm length: 214
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 134

Conread position: 1287-1500
Cow position:
Alignm length: 223
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 109, 143

Conread position: 1287-1500
Cow position:
Alignm length: 220
Alignm identity: 160
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 65, 142

Conread position: 1291-1500
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 66, 138

Conread position: 1317-1496
Cow position:
Alignm length: 188
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 42, 117

Conread position: 1336-1500
Cow position:
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.