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Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
1116-1498
               

               
Cow position:
               
chr3:55189517-55189920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
1131-1488
               

               
Cow position:
               
chr3:74601337-74600957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
1139-1500
               

               
Cow position:
               
chr3:7330926-7331279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
1149-1486
               

               
Cow position:
               
chr3:55177551-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
1149-1500
               

               
Cow position:
               
chr3:57764415-57764061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
1150-1389
               

               
Cow position:
               
chr3:49344895-49344643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
1152-1376
               

               
Cow position:
               
chr3:10733076-10732853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
204, 19
               

               
Conread position:
               
1152-1378
               

               
Cow position:
               
chr3:75173402-75173619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
1153-1500
               

               
Cow position:
               
chr3:15228643-15228991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
1154-1376
               

               
Cow position:
               
chr3:33002582-33002350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 163
               

               
Conread position:
               
1156-1353
               

               
Cow position:
               
chr3:76056093-76056298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1156-1373
               

               
Cow position:
               
chr3:22924185-22924409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1156-1374
               

               
Cow position:
               
chr3:15160710-15160485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 14
               

               
Conread position:
               
1156-1428
               

               
Cow position:
               
chr3:49363302-49363018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
86, 266
               

               
Conread position:
               
1156-1454
               

               
Cow position:
               
chr3:59605037-59604730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 178
               

               
Conread position:
               
1156-1488
               

               
Cow position:
               
chr3:61224554-61224896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
94, 111
               

               
Conread position:
               
1156-1498
               

               
Cow position:
               
chr3:12705351-12705710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 132
               

               
Conread position:
               
1156-1499
               

               
Cow position:
               
chr3:75107966-75107629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr3:6873079-6873410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
172, 26
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr3:22232472-22232818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
1156-1500
               

               
Cow position:
               
chr3:74754509-74754162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
1157-1490
               

               
Cow position:
               
chr3:19586059-19585705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 178
               

               
Conread position:
               
1159-1414
               

               
Cow position:
               
chr3:59299766-59299493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1159-1481
               

               
Cow position:
               
chr3:74584383-74584071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
21, 91
               

               
Conread position:
               
1160-1476
               

               
Cow position:
               
chr3:20802449-20802765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
1161-1350
               

               
Cow position:
               
chr3:23818679-23818481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1161-1389
               

               
Cow position:
               
chr3:10591323-10591565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
83, 76
               

               
Conread position:
               
1161-1463
               

               
Cow position:
               
chr3:51403085-51402779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr3:18393208-18393554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
9, 171
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr3:23105176-23105532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr3:23168878-23169232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
1162-1436
               

               
Cow position:
               
chr3:44960826-44961092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
1162-1500
               

               
Cow position:
               
chr3:74234373-74234030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
1163-1366
               

               
Cow position:
               
chr3:67407179-67407393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
1163-1393
               

               
Cow position:
               
chr3:22165225-22165469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 157
               

               
Conread position:
               
1163-1440
               

               
Cow position:
               
chr3:57704520-57704216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 165
               

               
Conread position:
               
1163-1454
               

               
Cow position:
               
chr3:17058360-17058661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
1163-1498
               

               
Cow position:
               
chr3:27274715-27274367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
74, 160
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr3:78092321-78092672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
1164-1381
               

               
Cow position:
               
chr3:35075060-35074839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 194
               

               
Conread position:
               
1164-1405
               

               
Cow position:
               
chr3:67626170-67626410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
1164-1500
               

               
Cow position:
               
chr3:14553059-14552712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 277
               

               
Conread position:
               
1165-1488
               

               
Cow position:
               
chr3:10958058-10958397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr3:15159220-15158875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
1166-1389
               

               
Cow position:
               
chr3:75608673-75608450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 170
               

               
Conread position:
               
1166-1453
               

               
Cow position:
               
chr3:15950731-15951031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 266
               

               
Conread position:
               
1167-1500
               

               
Cow position:
               
chr3:49650564-49650219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
1171-1319
               

               
Cow position:
               
chr3:59635483-59635333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1171-1392
               

               
Cow position:
               
chr3:23131988-23132222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1171-1396
               

               
Cow position:
               
chr3:29827986-29828205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
1171-1472
               

               
Cow position:
               
chr3:74846545-74846849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
186, 76
               

               
Conread position:
               
1171-1474
               

               
Cow position:
               
chr3:78093213-78093524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
1171-1488
               

               
Cow position:
               
chr3:23408184-23408506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr3:56476855-56476514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
1172-1387
               

               
Cow position:
               
chr3:9121022-9120798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
1172-1500
               

               
Cow position:
               
chr3:68616156-68616491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 157
               

               
Conread position:
               
1172-1500
               

               
Cow position:
               
chr3:73915650-73915970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
1173-1299
               

               
Cow position:
               
chr3:15689177-15689301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1173-1389
               

               
Cow position:
               
chr3:71474229-71474454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
1173-1392
               

               
Cow position:
               
chr3:64135875-64135665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
184, 76
               

               
Conread position:
               
1173-1481
               

               
Cow position:
               
chr3:10372434-10372133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
1173-1497
               

               
Cow position:
               
chr3:22675928-22676254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 178
               

               
Conread position:
               
1173-1497
               

               
Cow position:
               
chr3:60597715-60597379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 229
               

               
Conread position:
               
1173-1499
               

               
Cow position:
               
chr3:76922495-76922828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 253
               

               
Conread position:
               
1173-1500
               

               
Cow position:
               
chr3:75158533-75158193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
1175-1348
               

               
Cow position:
               
chr3:74069750-74069590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1176-1381
               

               
Cow position:
               
chr3:68004533-68004744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
1176-1493
               

               
Cow position:
               
chr3:79093886-79094207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 28
               

               
Conread position:
               
1176-1500
               

               
Cow position:
               
chr3:116357-116031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
1177-1392
               

               
Cow position:
               
chr3:51349972-51349770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
180, 62
               

               
Conread position:
               
1177-1495
               

               
Cow position:
               
chr3:59597347-59597022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
73, 223
               

               
Conread position:
               
1177-1499
               

               
Cow position:
               
chr3:2630934-2630629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
182, 27
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr3:64280764-64281098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
78, 266
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr3:71238323-71237990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
1178-1307
               

               
Cow position:
               
chr3:24370564-24370434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
1178-1336
               

               
Cow position:
               
chr3:74050533-74050698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1178-1337
               

               
Cow position:
               
chr3:43895890-43896057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1348
               

               
Cow position:
               
chr3:56943757-56943934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 30
               

               
Conread position:
               
1178-1349
               

               
Cow position:
               
chr3:19709278-19709101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr3:27246794-27246974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr3:31115105-31115285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr3:73701671-73701489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
1178-1359
               

               
Cow position:
               
chr3:49789424-49789604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
1178-1380
               

               
Cow position:
               
chr3:75777896-75778103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1389
               

               
Cow position:
               
chr3:71703631-71703428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
1178-1412
               

               
Cow position:
               
chr3:76270061-76269816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 124
               

               
Conread position:
               
1178-1421
               

               
Cow position:
               
chr3:69785447-69785716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1178-1463
               

               
Cow position:
               
chr3:3649066-3649347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
200, 63
               

               
Conread position:
               
1178-1490
               

               
Cow position:
               
chr3:71231571-71231239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 157
               

               
Conread position:
               
1178-1493
               

               
Cow position:
               
chr3:53790369-53790696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
1178-1495
               

               
Cow position:
               
chr3:48363242-48362924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
72, 166
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr3:6182060-6182363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr3:37186981-37186667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
179, 64
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr3:50614796-50614473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
179, 65
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr3:60264549-60264879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr3:48072713-48073039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr3:75080925-75080605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:8393512-8393184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:9641728-9641399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 71
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:17936674-17937001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 252
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:24353013-24352694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
176, 61
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:26066160-26065837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:29813399-29813078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 165
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:29887267-29887588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:36418314-36418632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
72, 160
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:39969690-39970034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:43233676-43233341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 215
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:44932685-44932346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 132
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:48253052-48252717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:49328107-49327775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:50768852-50768516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 255
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:52608354-52608021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 233
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:53222185-53221848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 258
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:54506879-54506543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:68707849-68708170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 161
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:68880958-68881278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:69750562-69750867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 53
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:70333796-70334130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 262
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr3:70761950-70762289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 162
               

               
Conread position:
               
1179-1354
               

               
Cow position:
               
chr3:20021440-20021255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
1179-1378
               

               
Cow position:
               
chr3:64196997-64196787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1179-1487
               

               
Cow position:
               
chr3:46541679-46541981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 39
               

               
Conread position:
               
1179-1490
               

               
Cow position:
               
chr3:15153860-15153536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr3:51578152-51578486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
80, 255
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr3:53428746-53429062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 217
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr3:59610547-59610887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 252
               

               
Conread position:
               
1180-1332
               

               
Cow position:
               
chr3:77654091-77653935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1180-1345
               

               
Cow position:
               
chr3:70333058-70333226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 145
               

               
Conread position:
               
1180-1351
               

               
Cow position:
               
chr3:31361594-31361413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1180-1353
               

               
Cow position:
               
chr3:54557837-54557661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1180-1355
               

               
Cow position:
               
chr3:50350807-50350984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
69, 83
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr3:31349938-31350154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
1180-1396
               

               
Cow position:
               
chr3:52845726-52845502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 199
               

               
Conread position:
               
1180-1420
               

               
Cow position:
               
chr3:8349400-8349644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
1180-1420
               

               
Cow position:
               
chr3:81881287-81881531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 65
               

               
Conread position:
               
1180-1474
               

               
Cow position:
               
chr3:18426529-18426840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 265
               

               
Conread position:
               
1180-1475
               

               
Cow position:
               
chr3:17331890-17331585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
1180-1475
               

               
Cow position:
               
chr3:73237354-73237053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
1180-1475
               

               
Cow position:
               
chr3:76156157-76155846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1180-1480
               

               
Cow position:
               
chr3:3883649-3883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 116
               

               
Conread position:
               
1180-1489
               

               
Cow position:
               
chr3:5374480-5374179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
179, 30
               

               
Conread position:
               
1180-1490
               

               
Cow position:
               
chr3:15057471-15057763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
196, 70
               

               
Conread position:
               
1180-1496
               

               
Cow position:
               
chr3:2396624-2396941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 167
               

               
Conread position:
               
1180-1496
               

               
Cow position:
               
chr3:58764915-58765239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
177, 253
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr3:59474291-59473957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr3:68156898-68156575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr3:75480169-75479839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 146
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr3:13577048-13577350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:525497-525184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
175, 24
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:8061291-8060961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:15051781-15052118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:18687072-18686741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 209
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:25477963-25477650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
100, 69
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:26904270-26903949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
128, 141
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:26970982-26970661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:28908045-28908368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
174, 66
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:54435139-54434809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:70896210-70895884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
36, 44
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:73764044-73764362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
202, 66
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:74533505-74533186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 69
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr3:78077361-78077027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
70, 236
               

               
Conread position:
               
1181-1381
               

               
Cow position:
               
chr3:10668709-10668921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 158
               

               
Conread position:
               
1181-1389
               

               
Cow position:
               
chr3:18001356-18001148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
1181-1467
               

               
Cow position:
               
chr3:7662027-7661719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 171
               

               
Conread position:
               
1181-1473
               

               
Cow position:
               
chr3:60389922-60389628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
1181-1493
               

               
Cow position:
               
chr3:73741718-73742014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
176, 61
               

               
Conread position:
               
1181-1499
               

               
Cow position:
               
chr3:76267804-76268146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 332
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr3:7337617-7337936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr3:30180253-30179914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 101
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr3:67744471-67744789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
178, 26
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr3:83454987-83455314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
1182-1462
               

               
Cow position:
               
chr3:73299234-73298958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
83, 19
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr3:45882068-45881743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 256
               

               
Conread position:
               
1183-1500
               

               
Cow position:
               
chr3:51233936-51234263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 177
               

               
Conread position:
               
1184-1500
               

               
Cow position:
               
chr3:38864285-38863949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1185-1499
               

               
Cow position:
               
chr3:57274224-57273901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
1185-1500
               

               
Cow position:
               
chr3:3985482-3985161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
1188-1500
               

               
Cow position:
               
chr3:74079475-74079805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 144
               

               
Conread position:
               
1191-1379
               

               
Cow position:
               
chr3:18607823-18607630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr3:45647826-45647514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 59
               

               
Conread position:
               
1192-1498
               

               
Cow position:
               
chr3:4050340-4050028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 55
               

               
Conread position:
               
1201-1380
               

               
Cow position:
               
chr3:82173921-82174100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
156, 66
               

               
Conread position:
               
1202-1376
               

               
Cow position:
               
chr3:71423417-71423588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 134
               

               
Conread position:
               
1202-1389
               

               
Cow position:
               
chr3:3947188-3946988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1202-1500
               

               
Cow position:
               
chr3:54946273-54945962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
1204-1363
               

               
Cow position:
               
chr3:19788684-19788854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1206-1393
               

               
Cow position:
               
chr3:16505339-16505529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
1207-1436
               

               
Cow position:
               
chr3:19626364-19626612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 11
               

               
Conread position:
               
1210-1500
               

               
Cow position:
               
chr3:32585286-32584987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 223
               

               
Conread position:
               
1220-1389
               

               
Cow position:
               
chr3:74801945-74802116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
1229-1500
               

               
Cow position:
               
chr3:53739072-53739352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 209
               

               
Conread position:
               
1231-1446
               

               
Cow position:
               
chr3:33693927-33693704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
1231-1500
               

               
Cow position:
               
chr3:82019730-82020006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
126, 188
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr3:13507573-13507300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 194
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr3:56059916-56059640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 194
               

               
Conread position:
               
1235-1500
               

               
Cow position:
               
chr3:68627581-68627847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
1238-1500
               

               
Cow position:
               
chr3:11063467-11063216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
1239-1496
               

               
Cow position:
               
chr3:27696875-27697141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
1242-1382
               

               
Cow position:
               
chr3:15173181-15173038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1242-1382
               

               
Cow position:
               
chr3:38100241-38100098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1242-1388
               

               
Cow position:
               
chr3:5305896-5305750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
115, 144
               

               
Conread position:
               
1242-1392
               

               
Cow position:
               
chr3:4481040-4480890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr3:83441796-83442047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:16752161-16752419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:31309256-31309521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:57624562-57624297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
113, 187
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:60265156-60265408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:65413179-65413446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:70899988-70899729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr3:78945741-78945999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
60, 136
               

               
Conread position:
               
1243-1390
               

               
Cow position:
               
chr3:44330340-44330488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1243-1494
               

               
Cow position:
               
chr3:74243089-74242835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
1243-1497
               

               
Cow position:
               
chr3:57760595-57760335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 185
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr3:3738578-3738322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr3:22716199-22716446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
1244-1500
               

               
Cow position:
               
chr3:5100676-5100933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 139
               

               
Conread position:
               
1244-1500
               

               
Cow position:
               
chr3:53150427-53150163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
106, 163
               

               
Conread position:
               
1246-1382
               

               
Cow position:
               
chr3:32409307-32409169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1246-1388
               

               
Cow position:
               
chr3:64648586-64648443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1246-1485
               

               
Cow position:
               
chr3:62789081-62789331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
111, 184
               

               
Conread position:
               
1246-1495
               

               
Cow position:
               
chr3:53508705-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 177
               

               
Conread position:
               
1246-1497
               

               
Cow position:
               
chr3:80581749-80581500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 106
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr3:55271951-55272211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
111, 181
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr3:59208888-59208648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr3:73395210-73394954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
137, 178
               

               
Conread position:
               
1247-1473
               

               
Cow position:
               
chr3:17235124-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
1249-1382
               

               
Cow position:
               
chr3:73461057-73460924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
1249-1389
               

               
Cow position:
               
chr3:82629406-82629266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
1249-1490
               

               
Cow position:
               
chr3:66292085-66292333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1249-1496
               

               
Cow position:
               
chr3:73709137-73708886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
1249-1497
               

               
Cow position:
               
chr3:30940897-30940652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
101, 66
               

               
Conread position:
               
1249-1499
               

               
Cow position:
               
chr3:67704637-67704377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
1249-1499
               

               
Cow position:
               
chr3:74134795-74134540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr3:53046572-53046825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 87
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr3:83474836-83474580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
103, 155
               

               
Conread position:
               
1252-1382
               

               
Cow position:
               
chr3:41652464-41652333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1252-1389
               

               
Cow position:
               
chr3:19682785-19682645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1252-1389
               

               
Cow position:
               
chr3:47753314-47753176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
1252-1422
               

               
Cow position:
               
chr3:3472128-3471947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
107, 118
               

               
Conread position:
               
1252-1490
               

               
Cow position:
               
chr3:26681726-26681954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
1252-1496
               

               
Cow position:
               
chr3:15506536-15506289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
107, 69
               

               
Conread position:
               
1252-1497
               

               
Cow position:
               
chr3:8394030-8393773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 185
               

               
Conread position:
               
1252-1497
               

               
Cow position:
               
chr3:58767351-58767106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
105, 166
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr3:80565054-80564798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
107, 189
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:17222052-17222310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:17447527-17447774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
105, 73
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:26874678-26874424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
91, 171
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:30222279-30222019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 181
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:48296786-48296543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:70565650-70565904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
105, 123
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr3:80072217-80071960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1253-1389
               

               
Cow position:
               
chr3:63177571-63177433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1253-1497
               

               
Cow position:
               
chr3:17934851-17935097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 212
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr3:20677755-20678001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
1254-1477
               

               
Cow position:
               
chr3:1785159-1785385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 180
               

               
Conread position:
               
1254-1498
               

               
Cow position:
               
chr3:26218964-26219214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 173
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr3:34669647-34669894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
111, 133
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr3:53113261-53113007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1257-1499
               

               
Cow position:
               
chr3:19006740-19006498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
1258-1365
               

               
Cow position:
               
chr3:16601524-16601416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1258-1383
               

               
Cow position:
               
chr3:26603470-26603599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1258-1389
               

               
Cow position:
               
chr3:20334089-20333957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1258-1483
               

               
Cow position:
               
chr3:79196841-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1258-1494
               

               
Cow position:
               
chr3:62826537-62826779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
1258-1497
               

               
Cow position:
               
chr3:50069845-50069601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
1258-1498
               

               
Cow position:
               
chr3:55835739-55835989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr3:59799330-59799081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
99, 167
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr3:62046746-62046496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
98, 143
               

               
Conread position:
               
1261-1475
               

               
Cow position:
               
chr3:71238548-71238332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
1262-1496
               

               
Cow position:
               
chr3:45534218-45534458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
1263-1496
               

               
Cow position:
               
chr3:58968826-58969063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 149
               

               
Conread position:
               
1263-1497
               

               
Cow position:
               
chr3:74502248-74502485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
96, 120
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr3:56300-56541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr3:55109536-55109781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 170
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr3:61840352-61840111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 73
               

               
Conread position:
               
1263-1500
               

               
Cow position:
               
chr3:81371726-81371481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
91, 165
               

               
Conread position:
               
1264-1497
               

               
Cow position:
               
chr3:76387532-76387762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr3:5097283-5097037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 166
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr3:48810570-48810803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
92, 118
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr3:72676166-72675926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 164
               

               
Conread position:
               
1266-1500
               

               
Cow position:
               
chr3:7940483-7940722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 72
               

               
Conread position:
               
1267-1500
               

               
Cow position:
               
chr3:75711379-75711145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
86, 153
               

               
Conread position:
               
1277-1500
               

               
Cow position:
               
chr3:73759454-73759682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
1278-1453
               

               
Cow position:
               
chr3:12670553-12670734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
76, 26
               

               
Conread position:
               
1279-1500
               

               
Cow position:
               
chr3:26553654-26553882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
1283-1500
               

               
Cow position:
               
chr3:66609787-66610009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
1286-1499
               

               
Cow position:
               
chr3:81277638-81277864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 156
               

               
Conread position:
               
1287-1500
               

               
Cow position:
               
chr3:31046899-31047117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
1295-1500
               

               
Cow position:
               
chr3:56523401-56523596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
1307-1500
               

               
Cow position:
               
chr3:5850896-5851090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
52, 79
               
Show alignments to all cow chromosomes.