• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Utr1-UTR010020F01.5.5
        

               
Conread position:
               
934-1500
               

               
Cow position:
               
chr5:50600514-50599939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
307, 456
               

               
Conread position:
               
1139-1497
               

               
Cow position:
               
chr5:35763508-35763161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
1142-1328
               

               
Cow position:
               
chr5:37672443-37672262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
1142-1500
               

               
Cow position:
               
chr5:26377421-26377784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
1143-1500
               

               
Cow position:
               
chr5:44446616-44446985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 288
               

               
Conread position:
               
1144-1500
               

               
Cow position:
               
chr5:21829121-21828749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
1152-1500
               

               
Cow position:
               
chr5:16893529-16893889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
1155-1500
               

               
Cow position:
               
chr5:30276932-30276580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
1156-1352
               

               
Cow position:
               
chr5:35394189-35394395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1156-1353
               

               
Cow position:
               
chr5:19079488-19079289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
1156-1497
               

               
Cow position:
               
chr5:11667938-11668300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
88, 283
               

               
Conread position:
               
1156-1499
               

               
Cow position:
               
chr5:57074091-57074450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
93, 45
               

               
Conread position:
               
1157-1497
               

               
Cow position:
               
chr5:56467916-56467583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 62
               

               
Conread position:
               
1158-1363
               

               
Cow position:
               
chr5:34288008-34288224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 180
               

               
Conread position:
               
1158-1366
               

               
Cow position:
               
chr5:51289356-51289568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 173
               

               
Conread position:
               
1158-1486
               

               
Cow position:
               
chr5:36038760-36039107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 67
               

               
Conread position:
               
1159-1480
               

               
Cow position:
               
chr5:30233154-30232802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 144
               

               
Conread position:
               
1160-1500
               

               
Cow position:
               
chr5:991716-991349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 284
               

               
Conread position:
               
1160-1500
               

               
Cow position:
               
chr5:16214919-16214570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
1161-1497
               

               
Cow position:
               
chr5:49474314-49474659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr5:11229430-11229786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr5:62639124-62638790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
198, 18
               

               
Conread position:
               
1161-1500
               

               
Cow position:
               
chr5:64175885-64176234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 250
               

               
Conread position:
               
1162-1382
               

               
Cow position:
               
chr5:63192512-63192733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
1162-1500
               

               
Cow position:
               
chr5:19278463-19278817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
94, 221
               

               
Conread position:
               
1162-1500
               

               
Cow position:
               
chr5:40109724-40109382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
1163-1497
               

               
Cow position:
               
chr5:27155241-27154909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 151
               

               
Conread position:
               
1163-1500
               

               
Cow position:
               
chr5:22667310-22666976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
19, 209
               

               
Conread position:
               
1164-1377
               

               
Cow position:
               
chr5:17105083-17104865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
80, 168
               

               
Conread position:
               
1165-1490
               

               
Cow position:
               
chr5:12434773-12434428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
16, 280
               

               
Conread position:
               
1165-1499
               

               
Cow position:
               
chr5:56028308-56028643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 192
               

               
Conread position:
               
1165-1500
               

               
Cow position:
               
chr5:69338051-69337712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 264
               

               
Conread position:
               
1166-1392
               

               
Cow position:
               
chr5:73253641-73253409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
1166-1498
               

               
Cow position:
               
chr5:72952060-72951724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
191, 85
               

               
Conread position:
               
1166-1500
               

               
Cow position:
               
chr5:30845342-30844996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 167
               

               
Conread position:
               
1167-1500
               

               
Cow position:
               
chr5:28302519-28302857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
1171-1337
               

               
Cow position:
               
chr5:70572589-70572424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 132
               

               
Conread position:
               
1171-1352
               

               
Cow position:
               
chr5:16668923-16668735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
1171-1366
               

               
Cow position:
               
chr5:35190337-35190133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1171-1382
               

               
Cow position:
               
chr5:60523958-60523740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 161
               

               
Conread position:
               
1171-1470
               

               
Cow position:
               
chr5:43403140-43402813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
79, 276
               

               
Conread position:
               
1171-1498
               

               
Cow position:
               
chr5:30253971-30253626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 275
               

               
Conread position:
               
1171-1499
               

               
Cow position:
               
chr5:8023979-8024311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
1171-1500
               

               
Cow position:
               
chr5:14314747-14314408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
1173-1480
               

               
Cow position:
               
chr5:56548796-56548481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
8, 141
               

               
Conread position:
               
1174-1497
               

               
Cow position:
               
chr5:7193644-7193317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 220
               

               
Conread position:
               
1175-1465
               

               
Cow position:
               
chr5:3772069-3771766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 107
               

               
Conread position:
               
1175-1467
               

               
Cow position:
               
chr5:29060712-29061003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 169
               

               
Conread position:
               
1177-1387
               

               
Cow position:
               
chr5:50824808-50824593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1177-1500
               

               
Cow position:
               
chr5:24995996-24996340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
49, 150
               

               
Conread position:
               
1178-1338
               

               
Cow position:
               
chr5:37253647-37253481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1340
               

               
Cow position:
               
chr5:49207105-49207277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1350
               

               
Cow position:
               
chr5:70591766-70591594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
1178-1351
               

               
Cow position:
               
chr5:29599328-29599508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1354
               

               
Cow position:
               
chr5:1693868-1694052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1178-1355
               

               
Cow position:
               
chr5:15991421-15991604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 108
               

               
Conread position:
               
1178-1367
               

               
Cow position:
               
chr5:37842055-37842257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1371
               

               
Cow position:
               
chr5:54312823-54312619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
1178-1375
               

               
Cow position:
               
chr5:34625172-34624973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
1178-1376
               

               
Cow position:
               
chr5:2240765-2240976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 184
               

               
Conread position:
               
1178-1382
               

               
Cow position:
               
chr5:51298491-51298705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
72, 155
               

               
Conread position:
               
1178-1390
               

               
Cow position:
               
chr5:26548919-26549142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1178-1396
               

               
Cow position:
               
chr5:20288034-20288270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
71, 228
               

               
Conread position:
               
1178-1405
               

               
Cow position:
               
chr5:40241958-40241730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
1178-1488
               

               
Cow position:
               
chr5:14920702-14921035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
61, 206
               

               
Conread position:
               
1178-1495
               

               
Cow position:
               
chr5:60016388-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
1178-1497
               

               
Cow position:
               
chr5:45845466-45845806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr5:29903319-29903637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
179, 54
               

               
Conread position:
               
1178-1498
               

               
Cow position:
               
chr5:47602032-47601704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 249
               

               
Conread position:
               
1178-1499
               

               
Cow position:
               
chr5:7044482-7044823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
67, 270
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:3582779-3582458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
72, 220
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:12322587-12322918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
67, 155
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:15364094-15363777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 212
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:17086793-17087142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:18899180-18898862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 17
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:26467851-26467506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:30303105-30302776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:38833338-38833006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
58, 29
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:41009786-41010110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 170
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:44847803-44848143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:46512544-46512880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:56014946-56014617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 255
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:61726181-61725856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:64139787-64139449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:66339297-66338962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:70951668-70951993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
1178-1500
               

               
Cow position:
               
chr5:71454407-71454712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
178, 62
               

               
Conread position:
               
1179-1389
               

               
Cow position:
               
chr5:67118627-67118420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
1179-1446
               

               
Cow position:
               
chr5:59626749-59627037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 112
               

               
Conread position:
               
1179-1454
               

               
Cow position:
               
chr5:6438803-6439104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
1179-1497
               

               
Cow position:
               
chr5:22242551-22242887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr5:4280667-4280344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 214
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr5:27419525-27419839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
177, 63
               

               
Conread position:
               
1179-1500
               

               
Cow position:
               
chr5:62172621-62172299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
1180-1365
               

               
Cow position:
               
chr5:26167641-26167445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
1180-1372
               

               
Cow position:
               
chr5:26147810-26147609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
1180-1376
               

               
Cow position:
               
chr5:75227991-75228186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 60
               

               
Conread position:
               
1180-1381
               

               
Cow position:
               
chr5:69383473-69383263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1180-1389
               

               
Cow position:
               
chr5:46540838-46541055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
74, 153
               

               
Conread position:
               
1180-1396
               

               
Cow position:
               
chr5:4267882-4267664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 53
               

               
Conread position:
               
1180-1398
               

               
Cow position:
               
chr5:51065737-51065522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
107, 80
               

               
Conread position:
               
1180-1475
               

               
Cow position:
               
chr5:35976716-35976429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
1180-1497
               

               
Cow position:
               
chr5:41165304-41164974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
70, 258
               

               
Conread position:
               
1180-1498
               

               
Cow position:
               
chr5:16025261-16025572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
179, 65
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr5:2309336-2309676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
72, 213
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr5:29828270-29827933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
61, 116
               

               
Conread position:
               
1180-1499
               

               
Cow position:
               
chr5:42050766-42050435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:6572953-6572638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
178, 69
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:21617677-21617341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 295
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:34562231-34561895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:44796514-44796847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:50942938-50943267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 198
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:56524384-56524058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 251
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:57934898-57935226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 256
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:65941028-65941367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
38, 264
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:66257856-66257522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
59, 153
               

               
Conread position:
               
1180-1500
               

               
Cow position:
               
chr5:72895908-72895571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 306
               

               
Conread position:
               
1181-1332
               

               
Cow position:
               
chr5:9559634-9559479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1181-1387
               

               
Cow position:
               
chr5:22795427-22795218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
1181-1487
               

               
Cow position:
               
chr5:73167793-73168106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 176
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr5:56877691-56877371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
104, 151
               

               
Conread position:
               
1181-1500
               

               
Cow position:
               
chr5:64321982-64321636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 309
               

               
Conread position:
               
1182-1498
               

               
Cow position:
               
chr5:74643464-74643786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
67, 155
               

               
Conread position:
               
1182-1500
               

               
Cow position:
               
chr5:55177100-55176773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
1184-1396
               

               
Cow position:
               
chr5:34914836-34915060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1184-1486
               

               
Cow position:
               
chr5:55232605-55232898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
1184-1498
               

               
Cow position:
               
chr5:56071076-56070741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
66, 255
               

               
Conread position:
               
1184-1500
               

               
Cow position:
               
chr5:47696242-47696559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
58, 206
               

               
Conread position:
               
1185-1500
               

               
Cow position:
               
chr5:18289335-18289012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
65, 166
               

               
Conread position:
               
1185-1500
               

               
Cow position:
               
chr5:48009664-48009966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1185-1500
               

               
Cow position:
               
chr5:74581003-74580679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
1187-1475
               

               
Cow position:
               
chr5:17554820-17555125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
1187-1500
               

               
Cow position:
               
chr5:41713504-41713185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
1188-1498
               

               
Cow position:
               
chr5:15721870-15722181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 231
               

               
Conread position:
               
1188-1498
               

               
Cow position:
               
chr5:22643033-22643333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
169, 19
               

               
Conread position:
               
1189-1498
               

               
Cow position:
               
chr5:66366722-66366403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 144
               

               
Conread position:
               
1189-1500
               

               
Cow position:
               
chr5:6286234-6286541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
1191-1389
               

               
Cow position:
               
chr5:72006286-72006490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
1191-1500
               

               
Cow position:
               
chr5:12351601-12351905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
1192-1378
               

               
Cow position:
               
chr5:38169102-38168905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
1192-1493
               

               
Cow position:
               
chr5:60184008-60183691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 5
               

               
Conread position:
               
1193-1498
               

               
Cow position:
               
chr5:17767944-17768258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
1194-1500
               

               
Cow position:
               
chr5:65753068-65752739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
35, 251
               

               
Conread position:
               
1197-1377
               

               
Cow position:
               
chr5:46704095-46704287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1197-1379
               

               
Cow position:
               
chr5:51125813-51125997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 163
               

               
Conread position:
               
1197-1388
               

               
Cow position:
               
chr5:56334314-56334507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
1200-1378
               

               
Cow position:
               
chr5:57686539-57686726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1200-1500
               

               
Cow position:
               
chr5:45397769-45397461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
1206-1389
               

               
Cow position:
               
chr5:71724485-71724302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
1213-1500
               

               
Cow position:
               
chr5:35826786-35826486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1214-1483
               

               
Cow position:
               
chr5:69731676-69731407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
176, 111
               

               
Conread position:
               
1215-1495
               

               
Cow position:
               
chr5:39447359-39447642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
1219-1500
               

               
Cow position:
               
chr5:43737793-43738070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
1221-1500
               

               
Cow position:
               
chr5:41545725-41546006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
1222-1497
               

               
Cow position:
               
chr5:28324503-28324240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
1224-1495
               

               
Cow position:
               
chr5:7698165-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
1233-1487
               

               
Cow position:
               
chr5:54375342-54375611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
6, 201
               

               
Conread position:
               
1235-1498
               

               
Cow position:
               
chr5:43992479-43992206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
120, 203
               

               
Conread position:
               
1237-1498
               

               
Cow position:
               
chr5:8820860-8821123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 96
               

               
Conread position:
               
1242-1378
               

               
Cow position:
               
chr5:49341901-49342038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1242-1388
               

               
Cow position:
               
chr5:9170436-9170580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
1242-1389
               

               
Cow position:
               
chr5:17602057-17602200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1242-1478
               

               
Cow position:
               
chr5:62378928-62378696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
117, 83
               

               
Conread position:
               
1242-1495
               

               
Cow position:
               
chr5:9893974-9894241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1242-1496
               

               
Cow position:
               
chr5:60599051-60599298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
1242-1497
               

               
Cow position:
               
chr5:25495210-25495465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 119
               

               
Conread position:
               
1242-1497
               

               
Cow position:
               
chr5:45574768-45574501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr5:25035110-25035359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1242-1499
               

               
Cow position:
               
chr5:55966735-55966995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:9089880-9090137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:35685085-35684821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:35969680-35969425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:53710541-53710811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:61810919-61810670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
157, 109
               

               
Conread position:
               
1242-1500
               

               
Cow position:
               
chr5:69461483-69461217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
1243-1377
               

               
Cow position:
               
chr5:55942232-55942367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1243-1380
               

               
Cow position:
               
chr5:9233841-9233980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1243-1499
               

               
Cow position:
               
chr5:68719017-68718760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr5:12673331-12673579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 82
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr5:32338819-32339081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
97, 26
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr5:43457384-43457633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
67, 96
               

               
Conread position:
               
1243-1500
               

               
Cow position:
               
chr5:65967584-65967845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
111, 186
               

               
Conread position:
               
1246-1496
               

               
Cow position:
               
chr5:44028165-44028414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
1246-1498
               

               
Cow position:
               
chr5:64591951-64592207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
111, 180
               

               
Conread position:
               
1246-1500
               

               
Cow position:
               
chr5:5110925-5111190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 195
               

               
Conread position:
               
1248-1389
               

               
Cow position:
               
chr5:39035920-39035780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
1249-1349
               

               
Cow position:
               
chr5:23207034-23207136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1249-1383
               

               
Cow position:
               
chr5:17604991-17605128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1249-1422
               

               
Cow position:
               
chr5:56338880-56339061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1249-1470
               

               
Cow position:
               
chr5:66551755-66551986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr5:16206014-16206272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 105
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr5:30949774-30950033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
105, 134
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr5:43929595-43929853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
111, 101
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr5:50533246-50533504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
1249-1500
               

               
Cow position:
               
chr5:54767768-54768027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
102, 181
               

               
Conread position:
               
1251-1494
               

               
Cow position:
               
chr5:20422054-20422295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
110, 74
               

               
Conread position:
               
1251-1499
               

               
Cow position:
               
chr5:4221117-4220868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
117, 106
               

               
Conread position:
               
1251-1500
               

               
Cow position:
               
chr5:35145468-35145232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
1252-1378
               

               
Cow position:
               
chr5:35647481-35647354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1252-1422
               

               
Cow position:
               
chr5:56517242-56517061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
1252-1426
               

               
Cow position:
               
chr5:35982599-35982786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1252-1462
               

               
Cow position:
               
chr5:69636362-69636156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
105, 134
               

               
Conread position:
               
1252-1495
               

               
Cow position:
               
chr5:58446945-58446691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
1252-1496
               

               
Cow position:
               
chr5:4710014-4710258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 79
               

               
Conread position:
               
1252-1498
               

               
Cow position:
               
chr5:30629019-30629273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
1252-1498
               

               
Cow position:
               
chr5:44726196-44726441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
105, 129
               

               
Conread position:
               
1252-1499
               

               
Cow position:
               
chr5:23168688-23168941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 207
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr5:6045434-6045174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
88, 179
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr5:14629667-14629930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 182
               

               
Conread position:
               
1252-1500
               

               
Cow position:
               
chr5:37646406-37646663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
1253-1382
               

               
Cow position:
               
chr5:12169630-12169761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1253-1496
               

               
Cow position:
               
chr5:13717434-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
1253-1497
               

               
Cow position:
               
chr5:37814763-37814509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 216
               

               
Conread position:
               
1253-1498
               

               
Cow position:
               
chr5:20783759-20783509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
1253-1500
               

               
Cow position:
               
chr5:6683230-6683472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
198, 93
               

               
Conread position:
               
1254-1416
               

               
Cow position:
               
chr5:24069526-24069363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
113, 157
               

               
Conread position:
               
1254-1498
               

               
Cow position:
               
chr5:57575909-57575654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 176
               

               
Conread position:
               
1254-1499
               

               
Cow position:
               
chr5:64026883-64027124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 138
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr5:49440734-49440989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr5:62142812-62142553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
101, 203
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr5:64823194-64823428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
1254-1500
               

               
Cow position:
               
chr5:67244054-67243812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
1255-1500
               

               
Cow position:
               
chr5:27306439-27306203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1258-1388
               

               
Cow position:
               
chr5:45186988-45187115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
1258-1498
               

               
Cow position:
               
chr5:27171861-27172095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr5:34301048-34300799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr5:46425723-46425968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr5:50821915-50821665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1258-1500
               

               
Cow position:
               
chr5:53835848-53835597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr5:28927465-28927706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
1261-1500
               

               
Cow position:
               
chr5:46509736-46509983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 208
               

               
Conread position:
               
1263-1497
               

               
Cow position:
               
chr5:15598111-15598347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
1263-1498
               

               
Cow position:
               
chr5:45804186-45803948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
1264-1392
               

               
Cow position:
               
chr5:56222419-56222547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
1264-1463
               

               
Cow position:
               
chr5:31640551-31640340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 166
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr5:19813094-19813332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
1264-1500
               

               
Cow position:
               
chr5:57626914-57626689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 41
               

               
Conread position:
               
1265-1500
               

               
Cow position:
               
chr5:57737224-57736993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
94, 165
               

               
Conread position:
               
1266-1500
               

               
Cow position:
               
chr5:54060400-54060159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
1268-1499
               

               
Cow position:
               
chr5:65588821-65588587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
1269-1493
               

               
Cow position:
               
chr5:58793486-58793724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 125
               

               
Conread position:
               
1272-1500
               

               
Cow position:
               
chr5:20407560-20407784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
85, 114
               

               
Conread position:
               
1276-1500
               

               
Cow position:
               
chr5:7755456-7755679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
1276-1500
               

               
Cow position:
               
chr5:32696709-32696937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
1306-1500
               

               
Cow position:
               
chr5:31144703-31144904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
1307-1500
               

               
Cow position:
               
chr5:34638967-34638767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 118
               

               
Conread position:
               
1316-1496
               

               
Cow position:
               
chr5:6670119-6670307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
1337-1497
               

               
Cow position:
               
chr5:4797269-4797430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
1358-1500
               

               
Cow position:
               
chr5:38647386-38647241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 73
               
Show alignments to all cow chromosomes.