Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010021E05.5 |
| Conread position: | 19-129 |
| Cow position: | chr3:22591942-22592052 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 118-264 |
| Cow position: | chr3:4874169-4874022 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 128-264 |
| Cow position: | chr3:22593978-22594114 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-267 |
| Cow position: | chr3:4904518-4904379 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-459 |
| Cow position: | chr3:4903349-4903154 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 262-459 |
| Cow position: | chr3:22594773-22594970 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-459 |
| Cow position: | chr3:4869789-4869596 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 457-635 |
| Cow position: | chr3:4903040-4902862 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 457-635 |
| Cow position: | chr3:22597180-22597358 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 492-635 |
| Cow position: | chr3:4869426-4869283 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 632-771 |
| Cow position: | chr3:4863850-4863711 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 632-771 |
| Cow position: | chr3:4899711-4899572 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 632-771 |
| Cow position: | chr3:22598340-22598479 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 130 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 765-922 |
| Cow position: | chr3:4863338-4863181 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 767-922 |
| Cow position: | chr3:4899142-4898987 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 133 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 769-945 |
| Cow position: | chr3:22599725-22599900 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 919-1092 |
| Cow position: | chr3:4862901-4862728 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 144 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 919-1092 |
| Cow position: | chr3:4898906-4898733 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 919-1092 |
| Cow position: | chr3:22600471-22600644 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1089-1247 |
| Cow position: | chr3:4861126-4860968 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1089-1247 |
| Cow position: | chr3:4898506-4898348 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 136 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1089-1247 |
| Cow position: | chr3:22600755-22600913 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 149 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1245-1371 |
| Cow position: | chr3:4860816-4860690 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1245-1371 |
| Cow position: | chr3:22601282-22601408 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1245-1388 |
| Cow position: | chr3:4898077-4897935 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1362-1515 |
| Cow position: | chr3:4859473-4859320 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1368-1515 |
| Cow position: | chr3:4897751-4897604 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1368-1515 |
| Cow position: | chr3:22602551-22602698 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 137 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1515-1647 |
| Cow position: | chr3:4856177-4856045 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1515-1647 |
| Cow position: | chr3:4897404-4897272 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1515-1647 |
| Cow position: | chr3:22602823-22602955 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 126 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1647-1748 |
| Cow position: | chr3:22603444-22603545 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1746-1841 |
| Cow position: | chr3:22605606-22605701 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1840-2196 |
| Cow position: | chr3:22606186-22606550 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.