Cow genome map

Conread name: Ss1.1-Utr1-UTR010024A10.5

Conread position: 117-461
Cow position: chr1:18240951-18240587 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 39, 180

Conread position: 119-430
Cow position: chr1:77613706-77614019 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 115

Conread position: 120-435
Cow position: chr1:38419939-38420266 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 210

Conread position: 120-470
Cow position: chr1:56724417-56724792 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 120-472
Cow position: chr1:72082043-72082406 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 247
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 63, 182

Conread position: 120-483
Cow position: chr1:28874344-28874729 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 121-503
Cow position: chr1:81841200-81840810 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 276
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 34, 158

Conread position: 122-483
Cow position: chr1:54407313-54406945 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 245
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 193

Conread position: 123-483
Cow position: chr1:29412887-29412537 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 36, 244

Conread position: 125-442
Cow position: chr1:31121605-31121274 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 31, 175

Conread position: 137-482
Cow position: chr1:82071021-82071379 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 229
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 199

Conread position: 161-483
Cow position: chr1:61541627-61541952 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 22, 80

Conread position: 164-480
Cow position: chr1:74285344-74285020 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 165

Conread position: 164-483
Cow position: chr1:49972828-49972511 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 27, 63

Conread position: 164-483
Cow position: chr1:76750638-76750310 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 34

Conread position: 172-483
Cow position: chr1:40511674-40511359 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 19, 51

Conread position: 173-477
Cow position: chr1:82565459-82565769 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 181
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 176-468
Cow position: chr1:21998054-21997771 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 40

Conread position: 191-477
Cow position: chr1:59207712-59207423 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 48, 10

Conread position: 191-480
Cow position: chr1:73069699-73069399 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 191-480
Cow position: chr1:90607515-90607219 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr1:25551328-25551626 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr1:55777952-55778249 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 27, 75

Conread position: 191-483
Cow position: chr1:62243290-62242991 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr1:79455590-79455291 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 191-483
Cow position: chr1:82922791-82922501 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 94

Conread position: 191-483
Cow position: chr1:88132139-88132438 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 27, 182

Conread position: 196-483
Cow position: chr1:56192794-56192502 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 194
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 129

Conread position: 196-483
Cow position: chr1:71740771-71740482 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 20

Conread position: 197-501
Cow position: chr1:32566554-32566243 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 212

Conread position: 198-483
Cow position: chr1:89769165-89768879 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 26

Conread position: 203-448
Cow position: chr1:5356506-5356753 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:4209586-4209864 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:10723960-10724235 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:20525857-20526135 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:20830273-20830551 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:50210464-50210186 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:53199923-53200200 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 36, 20

Conread position: 203-477
Cow position: chr1:69767958-69768236 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:80357796-80357514 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 14

Conread position: 203-477
Cow position: chr1:82477354-82477632 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 20

Conread position: 203-480
Cow position: chr1:17940392-17940111 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 14

Conread position: 203-480
Cow position: chr1:57423454-57423174 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 36, 14

Conread position: 203-483
Cow position: chr1:40575578-40575862 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 14

Conread position: 203-483
Cow position: chr1:82654039-82654319 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 14

Conread position: 203-504
Cow position: chr1:81288513-81288826 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 36, 14

Conread position: 203-504
Cow position: chr1:85793059-85793372 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 14

Conread position: 204-484
Cow position: chr1:33713450-33713734 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 188
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 13

Conread position: 208-483
Cow position: chr1:46837010-46837286 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 108

Conread position: 208-506
Cow position: chr1:85531972-85531665 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 29

Conread position: 211-480
Cow position: chr1:57658279-57658553 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 27, 154

Conread position: 217-465
Cow position: chr1:31364708-31364460 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 21, 125

Conread position: 217-465
Cow position: chr1:57364953-57364705 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 59

Conread position: 217-465
Cow position: chr1:72185490-72185237 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 217-477
Cow position: chr1:39545177-39545443 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 217-477
Cow position: chr1:40056494-40056760 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 217-477
Cow position: chr1:71561355-71561089 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 217-477
Cow position: chr1:77923098-77923364 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 217-477
Cow position: chr1:80445541-80445807 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 217-477
Cow position: chr1:86546746-86546481 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 217-479
Cow position: chr1:99219138-99218881 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 238, 104

Conread position: 217-483
Cow position: chr1:5503358-5503626 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 81

Conread position: 217-483
Cow position: chr1:26517499-26517227 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 220-483
Cow position: chr1:30533626-30533362 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 104

Conread position: 220-483
Cow position: chr1:91891725-91891459 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 188

Conread position: 224-477
Cow position: chr1:102433643-102433384 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 6, 101

Conread position: 224-483
Cow position: chr1:33552326-33552591 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 6, 0

Conread position: 224-483
Cow position: chr1:52357856-52357597 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 151, 13

Conread position: 224-483
Cow position: chr1:56142947-56142682 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 6, 153

Conread position: 225-480
Cow position: chr1:12060808-12060549 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 5, 184

Conread position: 225-480
Cow position: chr1:93855913-93856171 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 183

Conread position: 229-465
Cow position: chr1:30074274-30074511 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 24, 147

Conread position: 229-465
Cow position: chr1:69404407-69404643 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 24, 95

Conread position: 229-477
Cow position: chr1:85779047-85778799 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 129

Conread position: 229-483
Cow position: chr1:91597315-91597050 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 229-483
Cow position: chr1:94661075-94661331 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 147

Conread position: 230-465
Cow position: chr1:31417104-31416865 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 169

Conread position: 238-480
Cow position: chr1:76095647-76095408 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 43

Conread position: 238-504
Cow position: chr1:55275618-55275340 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 240-483
Cow position: chr1:34507841-34508077 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 57, 134

Conread position: 242-477
Cow position: chr1:17011317-17011082 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 159
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 57, 157

Conread position: 242-477
Cow position: chr1:33852687-33852925 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 242-483
Cow position: chr1:48248334-48248565 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 39

Conread position: 242-504
Cow position: chr1:77463077-77463336 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 38

Conread position: 252-461
Cow position: chr1:2180763-2180969 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 41, 25

Conread position: 356-504
Cow position: chr1:66279434-66279586 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.