Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 88-480 |
| Cow position: | chr10:29011394-29010987 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 120-464 |
| Cow position: | chr10:55285249-55285606 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 120-502 |
| Cow position: | chr10:58812465-58812061 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 222 |
| Conread position: | 124-483 |
| Cow position: | chr10:10719905-10719539 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 124-504 |
| Cow position: | chr10:24784817-24784409 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 218 |
| Conread position: | 128-504 |
| Cow position: | chr10:35225145-35224748 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 216 |
| Conread position: | 137-483 |
| Cow position: | chr10:24976480-24976124 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 199 |
| Conread position: | 164-483 |
| Cow position: | chr10:10583477-10583806 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 165-477 |
| Cow position: | chr10:38544528-38544214 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 165-483 |
| Cow position: | chr10:38722459-38722774 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 171-476 |
| Cow position: | chr10:46192516-46192816 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 190-480 |
| Cow position: | chr10:22909076-22908787 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 191-480 |
| Cow position: | chr10:2119616-2119330 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 191-483 |
| Cow position: | chr10:8291432-8291728 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr10:21488343-21488640 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 167 |
| Conread position: | 196-483 |
| Cow position: | chr10:57988604-57988312 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 130 |
| Conread position: | 197-477 |
| Cow position: | chr10:47908327-47908614 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 197-503 |
| Cow position: | chr10:28946871-28947175 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 197-506 |
| Cow position: | chr10:53485836-53485522 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 201-480 |
| Cow position: | chr10:22346357-22346640 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 201-504 |
| Cow position: | chr10:57555937-57555622 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 203-453 |
| Cow position: | chr10:19494889-19494636 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 203-477 |
| Cow position: | chr10:7897082-7896803 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr10:25652029-25651751 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr10:28256016-28255730 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr10:14805246-14805530 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-483 |
| Cow position: | chr10:33870685-33870969 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 208-483 |
| Cow position: | chr10:29101319-29101045 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 165 |
| Conread position: | 209-476 |
| Cow position: | chr10:39878009-39877746 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 217-470 |
| Cow position: | chr10:30684080-30683821 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 217-483 |
| Cow position: | chr10:62407365-62407098 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 217-504 |
| Cow position: | chr10:44708199-44707903 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 193 |
| Conread position: | 224-480 |
| Cow position: | chr10:22102657-22102914 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 224-483 |
| Cow position: | chr10:39439571-39439836 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 225-480 |
| Cow position: | chr10:1378916-1379177 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 225-483 |
| Cow position: | chr10:29845232-29844975 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 225-483 |
| Cow position: | chr10:37771306-37771568 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 228-483 |
| Cow position: | chr10:68160212-68159953 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 229-448 |
| Cow position: | chr10:14334409-14334190 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 229-474 |
| Cow position: | chr10:11822173-11822422 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 148 |
| Conread position: | 229-483 |
| Cow position: | chr10:7477891-7477644 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 237-502 |
| Cow position: | chr10:58376868-58376605 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 242-477 |
| Cow position: | chr10:10172175-10172413 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 242-504 |
| Cow position: | chr10:55094707-55094977 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 268-477 |
| Cow position: | chr10:5256599-5256387 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 273-483 |
| Cow position: | chr10:38451012-38451214 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 322-483 |
| Cow position: | chr10:31539652-31539816 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.