Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 119-483 |
| Cow position: | chr11:21849585-21849206 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 197 |
| Conread position: | 119-504 |
| Cow position: | chr11:23126707-23126316 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 123 |
| Conread position: | 120-465 |
| Cow position: | chr11:9974966-9974602 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 120-504 |
| Cow position: | chr11:2727664-2728072 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 120-515 |
| Cow position: | chr11:15943418-15943015 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 250 |
| Conread position: | 121-476 |
| Cow position: | chr11:10883233-10883605 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 206 |
| Conread position: | 121-483 |
| Cow position: | chr11:60033279-60032907 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 122-442 |
| Cow position: | chr11:28421064-28421389 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 219 |
| Conread position: | 124-505 |
| Cow position: | chr11:40507168-40506766 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 127-447 |
| Cow position: | chr11:36324323-36324651 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 137-483 |
| Cow position: | chr11:34454826-34455169 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 148-483 |
| Cow position: | chr11:30208118-30208452 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 159-502 |
| Cow position: | chr11:66730087-66730421 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 30 |
| Conread position: | 164-483 |
| Cow position: | chr11:19101490-19101170 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 164-483 |
| Cow position: | chr11:23249473-23249146 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 164-483 |
| Cow position: | chr11:41169700-41169372 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 167-465 |
| Cow position: | chr11:38834443-38834143 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 167-483 |
| Cow position: | chr11:44582342-44582019 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 168-504 |
| Cow position: | chr11:47738534-47738195 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 171-477 |
| Cow position: | chr11:44517854-44517548 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 172-475 |
| Cow position: | chr11:67154691-67154994 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 175-483 |
| Cow position: | chr11:43513612-43513301 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 176-470 |
| Cow position: | chr11:13064968-13064673 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 124, 44 |
| Conread position: | 191-480 |
| Cow position: | chr11:11989158-11989452 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-483 |
| Cow position: | chr11:12357386-12357078 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 191-483 |
| Cow position: | chr11:26548550-26548852 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 27, 278 |
| Conread position: | 191-499 |
| Cow position: | chr11:23881056-23881369 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 191-501 |
| Cow position: | chr11:58135419-58135738 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 274 |
| Conread position: | 191-503 |
| Cow position: | chr11:10848477-10848795 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 27, 219 |
| Conread position: | 196-476 |
| Cow position: | chr11:24394346-24394631 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 35, 153 |
| Conread position: | 196-504 |
| Cow position: | chr11:27668963-27668642 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 201-463 |
| Cow position: | chr11:25865798-25865542 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 203-477 |
| Cow position: | chr11:3494029-3494307 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr11:17106642-17106364 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr11:19063032-19062759 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr11:32452868-32453149 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr11:67845530-67845254 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-465 |
| Cow position: | chr11:30253275-30253530 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 204-480 |
| Cow position: | chr11:1494992-1494723 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 217-464 |
| Cow position: | chr11:26784311-26784555 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 217-477 |
| Cow position: | chr11:26123878-26123609 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 217-477 |
| Cow position: | chr11:50836616-50836350 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr11:57627000-57626734 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr11:26069997-26069718 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 190 |
| Conread position: | 217-483 |
| Cow position: | chr11:28228716-28228444 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-483 |
| Cow position: | chr11:29667554-29667274 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 217-504 |
| Cow position: | chr11:9733625-9733330 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 220-480 |
| Cow position: | chr11:50026682-50026427 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 224-483 |
| Cow position: | chr11:71330654-71330923 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 225-407 |
| Cow position: | chr11:44156199-44156015 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 225-483 |
| Cow position: | chr11:9302373-9302115 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 233 |
| Conread position: | 225-501 |
| Cow position: | chr11:85392774-85392494 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 9, 247 |
| Conread position: | 226-483 |
| Cow position: | chr11:21475187-21475444 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 237-434 |
| Cow position: | chr11:2358440-2358636 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 237-483 |
| Cow position: | chr11:49039304-49039057 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 242-483 |
| Cow position: | chr11:63654254-63654010 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 262-480 |
| Cow position: | chr11:52808459-52808673 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 262-483 |
| Cow position: | chr11:53430931-53430712 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 79 |
| Conread position: | 274-482 |
| Cow position: | chr11:12387537-12387740 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 191, 46 |
| Conread position: | 312-504 |
| Cow position: | chr11:15986402-15986595 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 91 |
Show alignments to all cow chromosomes.