Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010024A10.5 |
| Conread position: | 118-483 |
| Cow position: | chr13:11738913-11739304 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 207 |
| Conread position: | 119-483 |
| Cow position: | chr13:60699572-60699199 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 120-483 |
| Cow position: | chr13:14402101-14401717 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 39, 222 |
| Conread position: | 122-477 |
| Cow position: | chr13:21720883-21721257 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 220 |
| Conread position: | 123-508 |
| Cow position: | chr13:14177844-14177431 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 33, 222 |
| Conread position: | 124-482 |
| Cow position: | chr13:12733921-12733541 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 135-502 |
| Cow position: | chr13:47955370-47955735 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 155-483 |
| Cow position: | chr13:30327919-30327589 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 164-477 |
| Cow position: | chr13:15543606-15543925 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 164-483 |
| Cow position: | chr13:30276247-30275941 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 167-477 |
| Cow position: | chr13:50193323-50193013 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 177-483 |
| Cow position: | chr13:3180001-3180316 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 191-465 |
| Cow position: | chr13:31729802-31729531 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 189 |
| Conread position: | 191-480 |
| Cow position: | chr13:20541168-20540870 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 27, 286 |
| Conread position: | 191-483 |
| Cow position: | chr13:34342998-34343297 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-483 |
| Cow position: | chr13:35758378-35758672 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 201-477 |
| Cow position: | chr13:25692780-25693059 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 203-477 |
| Cow position: | chr13:678858-679136 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr13:21697371-21697649 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr13:28860272-28860549 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-477 |
| Cow position: | chr13:42217575-42217297 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 203-504 |
| Cow position: | chr13:49974773-49975085 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 204-504 |
| Cow position: | chr13:50110561-50110873 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 208-497 |
| Cow position: | chr13:2474881-2475179 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 209-464 |
| Cow position: | chr13:27599258-27599008 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 211-502 |
| Cow position: | chr13:23405585-23405296 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 11 |
| Conread position: | 217-465 |
| Cow position: | chr13:32984225-32983972 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-466 |
| Cow position: | chr13:6358243-6358497 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-470 |
| Cow position: | chr13:4942504-4942761 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 255 |
| Conread position: | 217-475 |
| Cow position: | chr13:60468545-60468809 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 217-477 |
| Cow position: | chr13:11141792-11141527 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 217-483 |
| Cow position: | chr13:4484911-4485180 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 216 |
| Conread position: | 217-483 |
| Cow position: | chr13:16253398-16253120 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 217-483 |
| Cow position: | chr13:42090573-42090302 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 182 |
| Conread position: | 217-501 |
| Cow position: | chr13:3653194-3652901 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 219-483 |
| Cow position: | chr13:60423874-60424141 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 160 |
| Conread position: | 220-483 |
| Cow position: | chr13:13900991-13901257 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 104 |
| Conread position: | 225-477 |
| Cow position: | chr13:37835192-37834942 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 226-504 |
| Cow position: | chr13:34096828-34096548 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 229-503 |
| Cow position: | chr13:44752101-44752379 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 240-504 |
| Cow position: | chr13:46527594-46527871 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 57, 164 |
| Conread position: | 242-477 |
| Cow position: | chr13:2387658-2387420 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 242-483 |
| Cow position: | chr13:5500851-5500608 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 80 |
| Conread position: | 242-483 |
| Cow position: | chr13:33524809-33524565 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 250-483 |
| Cow position: | chr13:14186156-14186391 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 251-511 |
| Cow position: | chr13:34041178-34040915 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 47, 258 |
| Conread position: | 262-483 |
| Cow position: | chr13:43981080-43980858 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 54 |
Show alignments to all cow chromosomes.